Variant report

Variant	rs17109338
Chromosome Location	chr14:79982034-79982035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10483924	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1080130	1.00[CEU][hapmap]
rs12587614	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17109288	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17109299	1.00[CEU][hapmap]
rs17109308	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17109317	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17109321	1.00[AMR][1000 genomes]
rs17109362	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17109374	0.85[JPT][hapmap]
rs17109409	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17109418	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17109557	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2371057	0.87[EUR][1000 genomes]
rs4448862	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs59471787	0.87[EUR][1000 genomes]
rs60586352	0.87[EUR][1000 genomes]
rs60604346	0.87[EUR][1000 genomes]
rs61274136	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6574509	1.00[CEU][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes]
rs7145991	1.00[CEU][hapmap]
rs7153889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7158082	0.87[EUR][1000 genomes]
rs7158779	0.87[EUR][1000 genomes]
rs7158959	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs73324258	0.87[EUR][1000 genomes]
rs8015537	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs920122	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs920123	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3523428	chr14:79980449-79982997	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3530283	chr14:79981056-79982097	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3523435	chr14:79981083-79982079	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3523432	chr14:79981087-79982099	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3523434	chr14:79981108-79982039	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3530284	chr14:79981110-79982069	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3530280	chr14:79981119-79982040	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3530282	chr14:79981121-79982058	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3523429	chr14:79981128-79982041	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3523433	chr14:79981137-79982038	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv16552	chr14:79981215-79982050	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79975000-79982200	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:79977800-79982200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:79979200-79982800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr14:79979600-79983400	Enhancers	Brain Germinal Matrix	brain
5	chr14:79980600-79982400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr14:79980600-79982800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:79980600-79982800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr14:79980600-79983000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr14:79980800-79982200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:79980800-79982400	Enhancers	HSMM	muscle
11	chr14:79981000-79982400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr14:79981000-79982400	Enhancers	Hela-S3	cervix
13	chr14:79981000-79982400	Enhancers	NHLF	lung
14	chr14:79981000-79982600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:79981000-79982600	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr14:79981000-79982600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr14:79981000-79982800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:79981000-79982800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:79981000-79982800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr14:79981000-79983000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:79981000-79983200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:79981200-79982200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr14:79981200-79982400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr14:79981200-79982400	Enhancers	Osteobl	bone
25	chr14:79981200-79982800	Enhancers	Stomach Smooth Muscle	stomach
26	chr14:79981200-79985200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr14:79981400-79982600	Enhancers	H1 Cell Line	embryonic stem cell
28	chr14:79981600-79982800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr14:79981800-79982600	Enhancers	A549	lung
30	chr14:79981800-79982800	Enhancers	NH-A	brain
31	chr14:79981800-80009600	Weak transcription	Aorta	Aorta
32	chr14:79982000-79982600	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr14:79982000-79982600	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr14:79982000-79982800	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links