Variant report

Variant	rs59471787
Chromosome Location	chr14:79981335-79981336
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:79879666..79880179-chr14:79981324..79981914,2	MCF-7	breast:
2	chr14:79879666..79880608-chr14:79981324..79981922,3	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11848738	1.00[AFR][1000 genomes]
rs11852085	0.93[AFR][1000 genomes]
rs17109288	0.92[ASN][1000 genomes]
rs17109308	0.95[ASN][1000 genomes]
rs17109321	0.95[ASN][1000 genomes]
rs17109338	0.87[EUR][1000 genomes]
rs17109351	0.93[ASN][1000 genomes]
rs17109362	0.93[ASN][1000 genomes]
rs17109365	0.93[ASN][1000 genomes]
rs17109374	0.92[ASN][1000 genomes]
rs17109409	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17109418	0.87[EUR][1000 genomes]
rs55708063	0.93[AFR][1000 genomes]
rs57252489	1.00[AFR][1000 genomes]
rs57281369	0.93[AFR][1000 genomes]
rs60586352	0.93[ASN][1000 genomes]
rs60604346	0.93[ASN][1000 genomes]
rs60701970	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61309702	1.00[AFR][1000 genomes]
rs6574509	0.93[ASN][1000 genomes]
rs7153889	0.89[EUR][1000 genomes]
rs7158082	0.93[ASN][1000 genomes]
rs7158779	0.93[ASN][1000 genomes]
rs7158959	0.92[ASN][1000 genomes]
rs73324258	0.93[ASN][1000 genomes]
rs74068005	0.93[AFR][1000 genomes]
rs74070257	1.00[AFR][1000 genomes]
rs74070258	1.00[AFR][1000 genomes]
rs74070263	1.00[AFR][1000 genomes]
rs74070265	1.00[AFR][1000 genomes]
rs74070266	1.00[AFR][1000 genomes]
rs74070273	1.00[AFR][1000 genomes]
rs74070276	1.00[AFR][1000 genomes]
rs8015537	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv1811223	chr14:79967761-79981954	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1805690	chr14:79971835-79981954	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1806121	chr14:79971835-79981954	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1807999	chr14:79971835-79981954	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv1809543	chr14:79971835-79981954	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv1812098	chr14:79971835-79981954	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3523428	chr14:79980449-79982997	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3530283	chr14:79981056-79982097	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3523435	chr14:79981083-79982079	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3523432	chr14:79981087-79982099	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3523434	chr14:79981108-79982039	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv3530284	chr14:79981110-79982069	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3530280	chr14:79981119-79982040	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv3530282	chr14:79981121-79982058	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv3523429	chr14:79981128-79982041	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv3523433	chr14:79981137-79982038	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv3530285	chr14:79981173-79981996	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv3523431	chr14:79981182-79982000	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv3523436	chr14:79981187-79981995	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv3530286	chr14:79981187-79981995	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv16552	chr14:79981215-79982050	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79975000-79982200	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:79977800-79982200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:79979200-79982800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr14:79979600-79983400	Enhancers	Brain Germinal Matrix	brain
5	chr14:79980600-79981400	Enhancers	NH-A	brain
6	chr14:79980600-79982400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr14:79980600-79982800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr14:79980600-79982800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr14:79980600-79983000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr14:79980800-79982000	Enhancers	NHEK	skin
11	chr14:79980800-79982200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr14:79980800-79982400	Enhancers	HSMM	muscle
13	chr14:79981000-79981400	Enhancers	Fetal Stomach	stomach
14	chr14:79981000-79982000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr14:79981000-79982000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr14:79981000-79982000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:79981000-79982000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr14:79981000-79982000	Enhancers	HSMMtube	muscle
19	chr14:79981000-79982400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr14:79981000-79982400	Enhancers	Hela-S3	cervix
21	chr14:79981000-79982400	Enhancers	NHLF	lung
22	chr14:79981000-79982600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr14:79981000-79982600	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr14:79981000-79982600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr14:79981000-79982800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr14:79981000-79982800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:79981000-79982800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:79981000-79983000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr14:79981000-79983200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:79981200-79981400	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr14:79981200-79981400	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr14:79981200-79981600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr14:79981200-79981800	Active TSS	A549	lung
34	chr14:79981200-79982000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr14:79981200-79982200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr14:79981200-79982400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr14:79981200-79982400	Enhancers	Osteobl	bone
38	chr14:79981200-79982800	Enhancers	Stomach Smooth Muscle	stomach
39	chr14:79981200-79985200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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