Variant report

Variant	rs17109409
Chromosome Location	chr14:80006056-80006057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10483924	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1080130	1.00[CEU][hapmap]
rs11848938	0.85[YRI][hapmap]
rs12587614	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17109288	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17109299	1.00[CEU][hapmap]
rs17109308	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17109317	1.00[CEU][hapmap]
rs17109321	0.87[ASN][1000 genomes]
rs17109338	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17109351	1.00[CHB][hapmap];0.81[JPT][hapmap];0.98[ASN][1000 genomes]
rs17109362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17109365	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17109374	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17109418	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17109557	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2371057	0.87[EUR][1000 genomes]
rs4448862	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs59471787	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60586352	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60604346	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60701970	0.87[ASN][1000 genomes]
rs61274136	0.87[EUR][1000 genomes]
rs6574509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7145991	1.00[CEU][hapmap]
rs7153889	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs7158082	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7158779	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7158959	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73324258	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8015537	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs920122	0.87[EUR][1000 genomes]
rs920123	1.00[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79981800-80009600	Weak transcription	Aorta	Aorta
2	chr14:80001400-80010000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr14:80001400-80010200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr14:80001600-80010200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr14:80005600-80011600	Enhancers	Placenta Amnion	Placenta Amnion

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