Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10083466	0.80[JPT][hapmap]
rs10133502	0.80[JPT][hapmap]
rs10483923	0.81[JPT][hapmap]
rs10483924	1.00[CEU][hapmap]
rs1080130	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11850956	0.81[JPT][hapmap]
rs12587614	1.00[CEU][hapmap]
rs12588083	0.81[JPT][hapmap]
rs12885724	0.81[JPT][hapmap]
rs17109288	1.00[CEU][hapmap]
rs17109308	1.00[CEU][hapmap]
rs17109313	0.81[JPT][hapmap]
rs17109317	1.00[CEU][hapmap]
rs17109338	1.00[CEU][hapmap]
rs17109362	1.00[CEU][hapmap]
rs17109409	1.00[CEU][hapmap]
rs17109418	1.00[CEU][hapmap]
rs17109557	1.00[CEU][hapmap]
rs17763953	0.82[JPT][hapmap]
rs2371101	0.81[JPT][hapmap]
rs4448862	1.00[CEU][hapmap]
rs4903863	0.81[JPT][hapmap]
rs4903864	0.81[JPT][hapmap]
rs59306232	0.85[ASN][1000 genomes]
rs6574509	1.00[CEU][hapmap]
rs7145128	0.94[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs7145991	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7146075	0.81[JPT][hapmap]
rs7147705	0.81[JPT][hapmap]
rs7151972	0.81[JPT][hapmap]
rs7153889	1.00[CEU][hapmap]
rs7158959	1.00[CEU][hapmap]
rs8015537	1.00[CEU][hapmap]
rs8017761	0.81[JPT][hapmap]
rs920123	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv521160	chr14:79963569-79971835	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79963800-79966800	Weak transcription	Brain Germinal Matrix	brain
2	chr14:79964200-79964800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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