Variant report

Variant	rs8017761
Chromosome Location	chr14:79957976-79957977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10083466	0.90[JPT][hapmap]
rs10130663	0.85[EUR][1000 genomes]
rs10133502	0.82[JPT][hapmap]
rs10144362	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10150805	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs10483923	0.90[JPT][hapmap]
rs1080129	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11845632	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11848580	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs11848640	0.84[EUR][1000 genomes]
rs11849345	0.83[EUR][1000 genomes]
rs11850075	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11850956	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12588083	0.83[JPT][hapmap]
rs12884436	0.90[JPT][hapmap]
rs12885724	0.90[JPT][hapmap]
rs17109299	0.81[JPT][hapmap]
rs17109313	0.85[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17763953	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2043585	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs2217889	0.85[CEU][hapmap];0.95[EUR][1000 genomes]
rs2371101	0.82[JPT][hapmap]
rs35879888	0.84[EUR][1000 genomes]
rs4566079	0.85[CEU][hapmap]
rs4903863	0.90[JPT][hapmap]
rs4903864	0.90[JPT][hapmap]
rs56111431	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61504574	0.86[EUR][1000 genomes]
rs61995170	0.83[EUR][1000 genomes]
rs61995179	0.81[EUR][1000 genomes]
rs7145991	0.81[JPT][hapmap]
rs7146075	0.90[JPT][hapmap]
rs7147705	0.90[JPT][hapmap]
rs7150181	0.86[EUR][1000 genomes]
rs7151972	0.89[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8020593	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs9323673	0.89[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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