Variant report

Variant	rs11845632
Chromosome Location	chr14:79953814-79953815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10083466	0.90[JPT][hapmap]
rs10130663	0.86[EUR][1000 genomes]
rs10133502	0.90[JPT][hapmap]
rs10144362	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10150805	0.89[CEU][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs10483923	0.90[JPT][hapmap]
rs1080129	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11848580	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs11848640	0.85[EUR][1000 genomes]
rs11849345	0.84[EUR][1000 genomes]
rs11850075	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11850956	1.00[ASW][hapmap];0.89[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.80[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12588083	0.90[JPT][hapmap]
rs12884436	0.95[JPT][hapmap]
rs12885724	0.90[JPT][hapmap]
rs17109313	0.85[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.80[TSI][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17763953	0.85[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2043585	0.96[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs2196447	0.85[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs2217889	0.85[CEU][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs2371101	0.90[JPT][hapmap]
rs35879888	0.84[EUR][1000 genomes]
rs4566079	0.85[CEU][hapmap];0.93[TSI][hapmap]
rs4903863	0.90[JPT][hapmap]
rs4903864	0.90[JPT][hapmap]
rs56111431	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61504574	0.86[EUR][1000 genomes]
rs61995170	0.84[EUR][1000 genomes]
rs61995179	0.81[EUR][1000 genomes]
rs7146075	0.90[JPT][hapmap]
rs7147705	0.90[JPT][hapmap]
rs7150181	0.82[TSI][hapmap];0.86[EUR][1000 genomes]
rs7151972	0.89[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8017761	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs8020593	0.89[CEU][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes]
rs9323673	0.89[CEU][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11845632	LTBP2	cis	cerebellum	SCAN
rs11845632	C14orf178	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79950600-79954000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:79953600-79954600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:79953600-79954800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:79953800-79954400	Enhancers	Pancreas	Pancrea

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