Variant report
| Variant | rs11850075 |
|---|---|
| Chromosome Location | chr14:79957418-79957419 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10083466 | 0.81[ASN][1000 genomes] |
| rs10130663 | 0.85[EUR][1000 genomes] |
| rs10133502 | 0.80[ASN][1000 genomes] |
| rs10144362 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10150805 | 0.87[EUR][1000 genomes] |
| rs10483923 | 0.81[ASN][1000 genomes] |
| rs1080129 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11845632 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11848580 | 0.84[EUR][1000 genomes] |
| rs11848640 | 0.84[EUR][1000 genomes] |
| rs11849345 | 0.83[EUR][1000 genomes] |
| rs11850956 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs17109313 | 0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17763953 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2043585 | 0.91[EUR][1000 genomes] |
| rs2196447 | 0.84[ASN][1000 genomes] |
| rs2217889 | 0.95[EUR][1000 genomes] |
| rs35879888 | 0.84[EUR][1000 genomes] |
| rs56111431 | 0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs61504574 | 0.86[EUR][1000 genomes] |
| rs61995170 | 0.83[EUR][1000 genomes] |
| rs61995179 | 0.81[EUR][1000 genomes] |
| rs7150181 | 0.86[EUR][1000 genomes] |
| rs7151972 | 0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8020593 | 0.86[EUR][1000 genomes] |
| rs9323673 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902110 | chr14:79624492-79998294 | Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1045241 | chr14:79885361-80734201 | Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1039622 | chr14:79908702-80266601 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv902112 | chr14:79939393-80050771 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:79957400-79957800 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
