Variant report

Variant	rs10083466
Chromosome Location	chr14:79984718-79984719
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10133502	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10144362	0.85[ASN][1000 genomes]
rs10150812	0.90[ASN][1000 genomes]
rs10483923	0.81[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1080130	0.81[JPT][hapmap]
rs11845632	0.90[JPT][hapmap]
rs11847985	0.89[EUR][1000 genomes]
rs11850075	0.81[ASN][1000 genomes]
rs11850956	0.90[JPT][hapmap]
rs12587965	0.91[ASN][1000 genomes]
rs12588083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12884436	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12885724	1.00[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1345974	0.89[EUR][1000 genomes]
rs1424845	0.81[ASW][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes]
rs1424847	0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs1424848	0.89[EUR][1000 genomes]
rs1424850	0.89[EUR][1000 genomes]
rs17109299	0.80[JPT][hapmap]
rs17109313	0.84[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17109414	0.89[EUR][1000 genomes]
rs17763953	0.90[JPT][hapmap];0.92[LWK][hapmap];0.80[MKK][hapmap]
rs2196447	0.85[JPT][hapmap]
rs2216901	0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs2371101	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4903863	1.00[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4903864	1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs55809771	0.90[EUR][1000 genomes]
rs56111431	0.83[ASN][1000 genomes]
rs60536527	0.89[EUR][1000 genomes]
rs61995207	0.89[EUR][1000 genomes]
rs61995209	0.87[EUR][1000 genomes]
rs7145128	0.83[JPT][hapmap]
rs7145991	0.80[JPT][hapmap]
rs7146075	1.00[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7147705	1.00[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7151972	0.84[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs73324277	0.89[EUR][1000 genomes]
rs764379	0.89[EUR][1000 genomes]
rs8017761	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79981200-79985200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr14:79981800-80009600	Weak transcription	Aorta	Aorta
3	chr14:79982800-79985200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr14:79982800-79989200	Weak transcription	Placenta Amnion	Placenta Amnion

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