Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10083466	0.83[JPT][hapmap]
rs10133502	0.83[JPT][hapmap]
rs10150805	0.83[MEX][hapmap]
rs10444685	0.96[CEU][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes]
rs10444741	0.96[CEU][hapmap];0.95[TSI][hapmap]
rs10483923	0.84[JPT][hapmap]
rs1080130	0.87[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs12588083	0.84[JPT][hapmap]
rs12884436	0.82[JPT][hapmap]
rs12885724	0.84[JPT][hapmap]
rs17109299	0.94[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs17109313	0.84[JPT][hapmap]
rs2009367	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs2371101	0.84[JPT][hapmap]
rs4903863	0.84[JPT][hapmap]
rs4903864	0.84[JPT][hapmap]
rs59306232	0.84[ASN][1000 genomes]
rs7145991	0.94[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs7146075	0.84[JPT][hapmap]
rs7147705	0.84[JPT][hapmap]
rs7150181	0.85[CEU][hapmap];0.83[MEX][hapmap]
rs7151972	0.84[JPT][hapmap]
rs8005235	0.84[CEU][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs8021408	0.88[CEU][hapmap];0.95[TSI][hapmap]
rs8022132	0.96[CEU][hapmap]
rs9323673	0.83[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv521160	chr14:79963569-79971835	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7145128	C14orf179	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79963800-79966800	Weak transcription	Brain Germinal Matrix	brain

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