Variant report

Variant	rs61995209
Chromosome Location	chr14:80011272-80011273
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10083466	0.87[EUR][1000 genomes]
rs10133502	0.87[EUR][1000 genomes]
rs10483923	0.85[EUR][1000 genomes]
rs11847985	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1345974	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1424845	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1424847	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1424848	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1424850	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17109414	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2019220	0.94[ASN][1000 genomes]
rs2216901	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60536527	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61995207	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73324277	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs764379	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80005600-80011600	Enhancers	Placenta Amnion	Placenta Amnion
2	chr14:80008400-80013000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr14:80008800-80011800	Enhancers	Stomach Smooth Muscle	stomach
4	chr14:80008800-80012000	Enhancers	Osteobl	bone
5	chr14:80009400-80012000	Enhancers	Rectal Smooth Muscle	rectum
6	chr14:80009600-80011800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:80009600-80018000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:80009800-80011400	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr14:80010000-80012000	Enhancers	NH-A	brain
10	chr14:80010200-80011400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr14:80010200-80012800	Weak transcription	Pancreas	Pancrea
12	chr14:80010400-80015800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:80010400-80018000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:80010600-80011600	Enhancers	Brain Hippocampus Middle	brain
15	chr14:80010600-80011800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr14:80010800-80011800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr14:80010800-80014000	Weak transcription	Aorta	Aorta
18	chr14:80010800-80019000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr14:80011000-80018800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr14:80011200-80013400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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