Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10483924	0.85[JPT][hapmap]
rs10483927	1.00[MKK][hapmap]
rs12587752	1.00[MKK][hapmap]
rs17109288	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17109308	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17109317	0.85[JPT][hapmap]
rs17109321	0.87[ASN][1000 genomes]
rs17109338	0.85[JPT][hapmap]
rs17109351	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.98[ASN][1000 genomes]
rs17109362	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17109365	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17109409	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17109473	1.00[MKK][hapmap]
rs59471787	0.92[ASN][1000 genomes]
rs60586352	0.98[ASN][1000 genomes]
rs60604346	0.98[ASN][1000 genomes]
rs60701970	0.87[ASN][1000 genomes]
rs6574509	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7153889	0.85[JPT][hapmap]
rs7158082	0.98[ASN][1000 genomes]
rs7158779	0.98[ASN][1000 genomes]
rs7158959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs73324258	0.98[ASN][1000 genomes]
rs8015537	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79981800-80009600	Weak transcription	Aorta	Aorta
2	chr14:79995400-80000400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr14:79995600-80000600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr14:79997200-79998000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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