Variant report
| Variant | rs60701970 |
|---|---|
| Chromosome Location | chr14:79967636-79967637 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:79962362..79964375-chr14:79965844..79968447,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs17109288 | 0.97[ASN][1000 genomes] |
| rs17109308 | 1.00[ASN][1000 genomes] |
| rs17109321 | 1.00[ASN][1000 genomes] |
| rs17109351 | 0.89[ASN][1000 genomes] |
| rs17109362 | 0.89[ASN][1000 genomes] |
| rs17109365 | 0.89[ASN][1000 genomes] |
| rs17109374 | 0.87[ASN][1000 genomes] |
| rs17109409 | 0.87[ASN][1000 genomes] |
| rs58351352 | 0.93[AFR][1000 genomes] |
| rs59306232 | 0.83[EUR][1000 genomes] |
| rs59471787 | 1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs60319911 | 0.90[AFR][1000 genomes] |
| rs60502118 | 1.00[AFR][1000 genomes] |
| rs60586352 | 0.89[ASN][1000 genomes] |
| rs60604346 | 0.89[ASN][1000 genomes] |
| rs6574509 | 0.89[ASN][1000 genomes] |
| rs7158082 | 0.89[ASN][1000 genomes] |
| rs7158779 | 0.89[ASN][1000 genomes] |
| rs7158959 | 0.87[ASN][1000 genomes] |
| rs73324258 | 0.89[ASN][1000 genomes] |
| rs74068698 | 0.86[AFR][1000 genomes] |
| rs74070211 | 0.93[AFR][1000 genomes] |
| rs74070212 | 0.93[AFR][1000 genomes] |
| rs74070239 | 0.90[AFR][1000 genomes] |
| rs74070242 | 0.96[AFR][1000 genomes] |
| rs8015537 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902110 | chr14:79624492-79998294 | Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1045241 | chr14:79885361-80734201 | Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1039622 | chr14:79908702-80266601 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv902112 | chr14:79939393-80050771 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv521160 | chr14:79963569-79971835 | Enhancers Active TSS Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:79966000-79976400 | Weak transcription | Stomach Smooth Muscle | stomach |
| 2 | chr14:79967000-79967800 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |
| 3 | chr14:79967600-79968800 | Weak transcription | Brain Germinal Matrix | brain |
