Variant report

Variant	rs17110582
Chromosome Location	chr10:90038864-90038865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17110722	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467414	chr10:90006507-90042154	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv895879	chr10:90015725-90219298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90031400-90041200	Weak transcription	Fetal Stomach	stomach
2	chr10:90032000-90039200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr10:90032000-90040600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:90032000-90042000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:90032400-90041000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:90032600-90041200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr10:90032800-90041000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:90032800-90042400	Weak transcription	Right Atrium	heart
9	chr10:90033000-90041000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:90033600-90039000	Weak transcription	Primary B cells from cord blood	blood
11	chr10:90035600-90041200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:90037800-90043200	Enhancers	Dnd41	blood
13	chr10:90038000-90039800	Enhancers	NH-A	brain
14	chr10:90038400-90040000	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr10:90038400-90041000	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr10:90038600-90039200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:90038600-90039400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:90038600-90039800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:90038600-90040000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr10:90038600-90040000	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr10:90038600-90040000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr10:90038600-90041600	Weak transcription	Fetal Lung	lung
23	chr10:90038600-90042800	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr10:90038800-90039000	Enhancers	HSMM	muscle
25	chr10:90038800-90039200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:90038800-90040000	Enhancers	Primary T cells fromperipheralblood	blood
27	chr10:90038800-90040000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr10:90038800-90040200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr10:90038800-90040200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:90038800-90040600	Enhancers	Thymus	Thymus
31	chr10:90038800-90040800	Enhancers	Primary T cells from cord blood	blood
32	chr10:90038800-90043000	Enhancers	Fetal Thymus	thymus

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