Variant report

Variant	rs17111000
Chromosome Location	chr10:90406822-90406823
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10694823	0.85[ASN][1000 genomes]
rs17109402	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17109578	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17109590	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17109630	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17109857	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17109867	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17110995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17113316	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41298235	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41299155	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41306844	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4584493	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57841856	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59420228	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1044680	chr10:90316066-90466092	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540740	chr10:90316066-90466092	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv551839	chr10:90334835-90422136	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90402800-90410800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:90402800-90417600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:90403400-90407200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:90403400-90410000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:90403400-90410000	Weak transcription	NHDF-Ad	bronchial
6	chr10:90403400-90410000	Weak transcription	NHLF	lung
7	chr10:90406600-90408000	Enhancers	HUVEC	blood vessel
8	chr10:90406800-90407000	Enhancers	Gastric	stomach
9	chr10:90406800-90407000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr10:90406800-90407200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:90406800-90407200	Enhancers	Hela-S3	cervix
12	chr10:90406800-90407400	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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