Variant report

Variant	rs17111050
Chromosome Location	chr10:90411863-90411864
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10694823	0.85[ASN][1000 genomes]
rs17109402	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17109578	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17109590	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17109630	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17109857	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17109867	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17110995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17111000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17113316	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41298235	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41299155	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41306844	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4584493	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57841856	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59420228	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv430254	chr10:90265420-90500520	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1044680	chr10:90316066-90466092	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv540740	chr10:90316066-90466092	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv551839	chr10:90334835-90422136	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv831941	chr10:90410488-90587332	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90402800-90417600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:90407000-90415000	Weak transcription	Gastric	stomach
3	chr10:90409000-90417800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:90409800-90413200	Enhancers	Hela-S3	cervix
5	chr10:90410000-90412800	Enhancers	HUVEC	blood vessel
6	chr10:90410000-90413000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr10:90410000-90413000	Enhancers	NH-A	brain
8	chr10:90410000-90413200	Enhancers	NHDF-Ad	bronchial
9	chr10:90410200-90413000	Enhancers	Osteobl	bone
10	chr10:90410200-90413200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:90410400-90413200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:90410600-90412800	Enhancers	HMEC	breast
13	chr10:90410800-90412000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:90410800-90412600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:90411200-90412000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr10:90411600-90412800	Enhancers	NHLF	lung
17	chr10:90411600-90413000	Enhancers	A549	lung
18	chr10:90411600-90417000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:90411800-90412800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:90411800-90413000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:90411800-90417200	Weak transcription	NHEK	skin
22	chr10:90411800-90417400	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links