Variant report

Variant	rs17111259
Chromosome Location	chr1:94719853-94719854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94373532..94375342-chr1:94718198..94720143,2	K562	blood:

Variant related genes	Relation type
ENSG00000023909	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17111192	1.00[JPT][hapmap]
rs7554714	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94713600-94722800	Weak transcription	Gastric	stomach
2	chr1:94714600-94724000	Weak transcription	A549	lung
3	chr1:94714800-94721200	Weak transcription	HSMM	muscle
4	chr1:94716200-94720000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:94716200-94720000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:94716400-94720000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:94716400-94720000	Weak transcription	HMEC	breast
8	chr1:94716600-94724000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr1:94718400-94724200	Weak transcription	HepG2	liver
10	chr1:94719000-94720000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:94719200-94721000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:94719200-94721800	Enhancers	HUVEC	blood vessel
13	chr1:94719400-94723000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr1:94719600-94720200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:94719600-94721800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:94719600-94721800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr1:94719800-94720200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:94719800-94720200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:94719800-94720200	Enhancers	Liver	Liver
20	chr1:94719800-94721400	Enhancers	NH-A	brain
21	chr1:94719800-94721600	Enhancers	Adipose Nuclei	Adipose
22	chr1:94719800-94721600	Enhancers	NHDF-Ad	bronchial
23	chr1:94719800-94721600	Enhancers	NHEK	skin
24	chr1:94719800-94721600	Enhancers	Osteobl	bone
25	chr1:94719800-94721800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:94719800-94721800	Enhancers	Stomach Mucosa	stomach

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