Variant report

Variant	rs17112084
Chromosome Location	chr1:55933038-55933039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1006806	1.00[AMR][1000 genomes]
rs1695953	1.00[AMR][1000 genomes]
rs17112091	1.00[AMR][1000 genomes]
rs769988	1.00[ASW][hapmap]
rs904605	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008241	chr1:55922008-55972596	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:55929000-55935200	Enhancers	NHDF-Ad	bronchial
2	chr1:55931000-55933800	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:55931200-55933800	Weak transcription	Thymus	Thymus
4	chr1:55931200-55935800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:55931400-55935200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:55931600-55933200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:55931600-55935600	Enhancers	Fetal Muscle Leg	muscle
8	chr1:55931800-55933200	Enhancers	Fetal Muscle Trunk	muscle
9	chr1:55931800-55933400	Enhancers	NHLF	lung
10	chr1:55931800-55934000	Weak transcription	Fetal Thymus	thymus
11	chr1:55932600-55938000	Weak transcription	HMEC	breast
12	chr1:55932800-55934200	Weak transcription	Ovary	ovary
13	chr1:55932800-55935000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:55932800-55940000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr1:55933000-55933400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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