Variant report

Variant	rs17112091
Chromosome Location	chr1:55933412-55933413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1006806	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1695953	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17112084	1.00[AMR][1000 genomes]
rs769988	1.00[ASW][hapmap];0.90[LWK][hapmap]
rs904605	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10184	chr1:55728755-56084833	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1008241	chr1:55922008-55972596	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:55929000-55935200	Enhancers	NHDF-Ad	bronchial
2	chr1:55931000-55933800	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:55931200-55933800	Weak transcription	Thymus	Thymus
4	chr1:55931200-55935800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:55931400-55935200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:55931600-55935600	Enhancers	Fetal Muscle Leg	muscle
7	chr1:55931800-55934000	Weak transcription	Fetal Thymus	thymus
8	chr1:55932600-55938000	Weak transcription	HMEC	breast
9	chr1:55932800-55934200	Weak transcription	Ovary	ovary
10	chr1:55932800-55935000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:55932800-55940000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:55933200-55933600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr1:55933200-55933800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:55933400-55933800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:55933400-55933800	Weak transcription	NHLF	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links