Variant report

Variant	rs17112254
Chromosome Location	chr5:151124256-151124257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:151120108..151124287-chr5:151137525..151139418,3	MCF-7	breast:
2	chr5:151123408..151126021-chr5:151128204..151131896,3	MCF-7	breast:
3	chr5:151119267..151125823-chr5:151135086..151139341,8	K562	blood:
4	chr5:151123212..151125823-chr5:151136668..151139341,3	K562	blood:
5	chr5:151118929..151121871-chr5:151122174..151125024,4	K562	blood:

Variant related genes	Relation type
ENSG00000177556	Chromatin interaction

rs_ID	r²[population]
rs17112252	0.82[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.80[AFR][1000 genomes]
rs28917219	0.86[MKK][hapmap]
rs73794319	0.85[AMR][1000 genomes]
rs73794320	0.85[AMR][1000 genomes]
rs73794321	0.85[AMR][1000 genomes]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151098000-151124800	Weak transcription	Aorta	Aorta
2	chr5:151101800-151124800	Weak transcription	Gastric	stomach
3	chr5:151112400-151125000	Weak transcription	Esophagus	oesophagus
4	chr5:151120000-151124600	Weak transcription	Lung	lung
5	chr5:151120000-151137600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr5:151120200-151124600	Weak transcription	Left Ventricle	heart
7	chr5:151120200-151124600	Weak transcription	Right Ventricle	heart
8	chr5:151120200-151137000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:151120200-151137200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr5:151120400-151124400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:151120400-151124600	Weak transcription	Fetal Brain Male	brain
12	chr5:151120600-151125000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr5:151120600-151132400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:151120600-151135000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr5:151120800-151124400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr5:151120800-151124400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:151120800-151124400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr5:151120800-151124400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr5:151120800-151124400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr5:151120800-151124400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr5:151120800-151124600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr5:151120800-151124600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr5:151120800-151124600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr5:151120800-151124600	Weak transcription	Fetal Heart	heart
25	chr5:151120800-151124600	Weak transcription	Psoas Muscle	Psoas
26	chr5:151120800-151124600	Weak transcription	Right Atrium	heart
27	chr5:151120800-151124800	Enhancers	NH-A	brain
28	chr5:151120800-151134600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr5:151120800-151135000	Weak transcription	Small Intestine	intestine
30	chr5:151120800-151135200	Weak transcription	Stomach Mucosa	stomach
31	chr5:151120800-151136800	Weak transcription	Ovary	ovary
32	chr5:151120800-151136800	Weak transcription	Hela-S3	cervix
33	chr5:151120800-151137000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr5:151121000-151124400	Enhancers	NHDF-Ad	bronchial
35	chr5:151121200-151124400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr5:151121200-151124600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr5:151121200-151125200	Strong transcription	Fetal Stomach	stomach
38	chr5:151121400-151124400	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr5:151121400-151124600	Strong transcription	Primary T cells from cord blood	blood
40	chr5:151121600-151124600	Strong transcription	Primary B cells from peripheral blood	blood
41	chr5:151121600-151124600	Genic enhancers	GM12878-XiMat	blood
42	chr5:151121600-151124800	Strong transcription	Liver	Liver
43	chr5:151121800-151124400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr5:151121800-151126400	Strong transcription	Brain Germinal Matrix	brain
45	chr5:151121800-151126400	Genic enhancers	NHEK	skin
46	chr5:151122000-151124800	Strong transcription	Fetal Thymus	thymus
47	chr5:151122000-151126200	Strong transcription	Fetal Brain Female	brain
48	chr5:151122000-151127000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr5:151122200-151124400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr5:151122200-151124600	Strong transcription	Primary B cells from cord blood	blood

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