Variant report

Variant	rs17112252
Chromosome Location	chr5:151123347-151123348
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:151120987..151123964-chr5:151149229..151151918,3	K562	blood:
2	chr5:151120108..151124287-chr5:151137525..151139418,3	MCF-7	breast:
3	chr5:151121801..151123526-chr5:151151236..151153434,2	K562	blood:
4	chr5:151119267..151125823-chr5:151135086..151139341,8	K562	blood:
5	chr5:151123212..151125823-chr5:151136668..151139341,3	K562	blood:
6	chr5:151037866..151039295-chr5:151122002..151123800,16	MCF-7	breast:
7	chr5:151118929..151121871-chr5:151122174..151125024,4	K562	blood:

Variant related genes	Relation type
ENSG00000145907	Chromatin interaction
ENSG00000177556	Chromatin interaction

rs_ID	r²[population]
rs13362032	1.00[GIH][hapmap]
rs17096163	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17112254	0.82[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.80[AFR][1000 genomes]
rs17112288	1.00[ASN][1000 genomes]
rs17741838	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28917175	1.00[ASN][1000 genomes]
rs57863201	1.00[ASN][1000 genomes]
rs6867160	1.00[ASN][1000 genomes]
rs73285940	1.00[ASN][1000 genomes]
rs73285957	1.00[ASN][1000 genomes]
rs73285959	1.00[ASN][1000 genomes]
rs73285980	1.00[ASN][1000 genomes]
rs7701770	1.00[GIH][hapmap]

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151098000-151124800	Weak transcription	Aorta	Aorta
2	chr5:151101800-151124800	Weak transcription	Gastric	stomach
3	chr5:151112400-151125000	Weak transcription	Esophagus	oesophagus
4	chr5:151120000-151124600	Weak transcription	Lung	lung
5	chr5:151120000-151137600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr5:151120200-151123600	Weak transcription	Colonic Mucosa	Colon
7	chr5:151120200-151124600	Weak transcription	Left Ventricle	heart
8	chr5:151120200-151124600	Weak transcription	Right Ventricle	heart
9	chr5:151120200-151137000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:151120200-151137200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:151120400-151124400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:151120400-151124600	Weak transcription	Fetal Brain Male	brain
13	chr5:151120600-151123600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr5:151120600-151123800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr5:151120600-151124000	Weak transcription	K562	blood
16	chr5:151120600-151125000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:151120600-151132400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:151120600-151135000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr5:151120800-151124000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr5:151120800-151124000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr5:151120800-151124200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:151120800-151124200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr5:151120800-151124200	Weak transcription	Colon Smooth Muscle	Colon
24	chr5:151120800-151124200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr5:151120800-151124200	Weak transcription	Pancreas	Pancrea
26	chr5:151120800-151124200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr5:151120800-151124400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr5:151120800-151124400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr5:151120800-151124400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr5:151120800-151124400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr5:151120800-151124400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr5:151120800-151124400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr5:151120800-151124600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr5:151120800-151124600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr5:151120800-151124600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr5:151120800-151124600	Weak transcription	Fetal Heart	heart
37	chr5:151120800-151124600	Weak transcription	Psoas Muscle	Psoas
38	chr5:151120800-151124600	Weak transcription	Right Atrium	heart
39	chr5:151120800-151124800	Enhancers	NH-A	brain
40	chr5:151120800-151134600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr5:151120800-151135000	Weak transcription	Small Intestine	intestine
42	chr5:151120800-151135200	Weak transcription	Stomach Mucosa	stomach
43	chr5:151120800-151136800	Weak transcription	Ovary	ovary
44	chr5:151120800-151136800	Weak transcription	Hela-S3	cervix
45	chr5:151120800-151137000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr5:151121000-151124400	Enhancers	NHDF-Ad	bronchial
47	chr5:151121200-151123400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr5:151121200-151124200	Strong transcription	Primary hematopoietic stem cells	blood
49	chr5:151121200-151124200	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr5:151121200-151124400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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