Variant report

Variant	rs13362032
Chromosome Location	chr5:151085698-151085699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10057658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10068356	0.81[AFR][1000 genomes]
rs10476773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13359692	0.81[AFR][1000 genomes]
rs13359696	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13436675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17096163	1.00[GIH][hapmap]
rs17112252	1.00[GIH][hapmap]
rs17741697	1.00[ASN][1000 genomes]
rs17741838	1.00[GIH][hapmap]
rs73794307	1.00[ASN][1000 genomes]
rs7701770	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151077400-151086000	Weak transcription	Lung	lung
2	chr5:151077600-151087200	Weak transcription	Spleen	Spleen
3	chr5:151079000-151097000	Weak transcription	Right Atrium	heart
4	chr5:151079600-151086600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:151080200-151086400	Weak transcription	HSMM	muscle
6	chr5:151080600-151086600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:151080800-151087200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:151080800-151087200	Weak transcription	Adipose Nuclei	Adipose
9	chr5:151080800-151097000	Weak transcription	NHLF	lung
10	chr5:151081200-151087200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:151081400-151087800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:151082800-151086400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:151082800-151087200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:151082800-151087200	Weak transcription	Fetal Stomach	stomach
15	chr5:151082800-151087200	Weak transcription	Psoas Muscle	Psoas
16	chr5:151082800-151087200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr5:151083000-151086800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr5:151083000-151087200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr5:151083000-151087200	Weak transcription	Left Ventricle	heart
20	chr5:151083000-151087800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr5:151083200-151087200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr5:151084000-151087200	Weak transcription	Small Intestine	intestine
23	chr5:151084000-151088400	Weak transcription	K562	blood
24	chr5:151084200-151086000	Weak transcription	Fetal Muscle Leg	muscle
25	chr5:151084200-151086600	Weak transcription	HSMMtube	muscle
26	chr5:151084200-151087200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr5:151084200-151087200	Weak transcription	Fetal Intestine Large	intestine
28	chr5:151084200-151087200	Weak transcription	Fetal Intestine Small	intestine
29	chr5:151084200-151087200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr5:151084600-151087000	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links