Variant report

Variant	rs7701770
Chromosome Location	chr5:151086633-151086634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr5:151086522-151086926	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr5:151086448-151086908	MCF10A-Er-Src	breast:	n/a	n/a
3	SP1	chr5:151086416-151086929	HCT-116	colon:	n/a	n/a
4	FOS	chr5:151086504-151086835	HUVEC	blood vessel:	n/a	n/a
5	STAT3	chr5:151086522-151086947	MCF10A-Er-Src	breast:	n/a	n/a
6	CBX3	chr5:151086470-151086854	HCT-116	colon:	n/a	n/a
7	FOS	chr5:151086557-151086863	MCF10A-Er-Src	breast:	n/a	n/a
8	GATA3	chr5:151086387-151086889	A549	lung:	n/a	n/a
9	FOSL2	chr5:151086483-151086875	A549	lung:	n/a	n/a
10	FOS	chr5:151086428-151086941	MCF10A-Er-Src	breast:	n/a	n/a
11	FOSL2	chr5:151086434-151086842	A549	lung:	n/a	n/a
12	FOSL1	chr5:151086368-151086921	HCT-116	colon:	n/a	n/a
13	STAT3	chr5:151086536-151086934	MCF10A-Er-Src	breast:	n/a	n/a
14	E2F4	chr5:151086590-151086766	MCF10A-Er-Src	breast:	n/a	n/a
15	FOS	chr5:151086434-151086906	MCF10A-Er-Src	breast:	n/a	n/a
16	RFX5	chr5:151086476-151086639	K562	blood:	n/a	n/a
17	JUND	chr5:151086458-151086883	HCT-116	colon:	n/a	n/a
18	RCOR1	chr5:151086329-151087027	IMR90	lung:	n/a	n/a
19	JUND	chr5:151086412-151086831	HCT-116	colon:	n/a	n/a
20	MYC	chr5:151086520-151086688	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
RN7SKP232	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10057658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10068356	0.81[AFR][1000 genomes]
rs10476773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13359692	0.81[AFR][1000 genomes]
rs13359696	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13362032	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13436675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17096163	1.00[GIH][hapmap]
rs17112252	1.00[GIH][hapmap]
rs17741697	1.00[ASN][1000 genomes]
rs17741838	1.00[GIH][hapmap]
rs73794307	1.00[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151077600-151087200	Weak transcription	Spleen	Spleen
2	chr5:151079000-151097000	Weak transcription	Right Atrium	heart
3	chr5:151080800-151087200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:151080800-151087200	Weak transcription	Adipose Nuclei	Adipose
5	chr5:151080800-151097000	Weak transcription	NHLF	lung
6	chr5:151081200-151087200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:151081400-151087800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:151082800-151087200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:151082800-151087200	Weak transcription	Fetal Stomach	stomach
10	chr5:151082800-151087200	Weak transcription	Psoas Muscle	Psoas
11	chr5:151082800-151087200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr5:151083000-151086800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr5:151083000-151087200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr5:151083000-151087200	Weak transcription	Left Ventricle	heart
15	chr5:151083000-151087800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr5:151083200-151087200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr5:151084000-151087200	Weak transcription	Small Intestine	intestine
18	chr5:151084000-151088400	Weak transcription	K562	blood
19	chr5:151084200-151087200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr5:151084200-151087200	Weak transcription	Fetal Intestine Large	intestine
21	chr5:151084200-151087200	Weak transcription	Fetal Intestine Small	intestine
22	chr5:151084200-151087200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr5:151084600-151087000	Weak transcription	HepG2	liver
24	chr5:151086000-151088200	Enhancers	Fetal Muscle Leg	muscle
25	chr5:151086400-151088000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr5:151086400-151088400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr5:151086400-151088400	Enhancers	HSMM	muscle
28	chr5:151086600-151086800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr5:151086600-151087200	Weak transcription	Lung	lung
30	chr5:151086600-151088000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr5:151086600-151088200	Enhancers	HSMMtube	muscle
32	chr5:151086600-151088400	Enhancers	HUVEC	blood vessel

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