Variant report

Variant	rs10476773
Chromosome Location	chr5:151087368-151087369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr5:151087251-151088311	PANC-1	pancreas:	n/a	chr5:151087624-151087633 chr5:151087956-151087965
2	CTCF	chr5:151087300-151087450	NHDF-neo	bronchial:	n/a	n/a
3	CTCF	chr5:151087260-151087410	HCPEpiC	choroid plexus:	n/a	n/a
4	CTCF	chr5:151087260-151087410	HVMF	connective:	n/a	n/a
5	CTCF	chr5:151087240-151087390	AG10803	skin:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr5:151087325-151087375	GM06990	blood:	n/a
2	chr5:151087325-151087375	GM12878	blood:	n/a
3	chr5:151087325-151087375	H1-hESC	embryonic stem cell:	embryo
4	chr5:151087325-151087375	PrEC	prostate:	n/a
5	chr5:151087325-151087375	NT2-D1	testis:	n/a
6	chr5:151087325-151087375	T-47D	breast:	n/a
7	chr5:151087325-151087375	BE2_C	brain:	n/a
8	chr5:151087325-151087375	Jurkat	blood:	n/a
9	chr5:151087325-151087375	HRCEpiC	kidney:	n/a
10	chr5:151087325-151087375	GM19239	blood:	n/a
11	chr5:151087325-151087375	U87	brain:	n/a
12	chr5:151087325-151087375	HPAEpiC	pulmonary alveolar:	n/a
13	chr5:151087325-151087375	AG09309	skin:	n/a
14	chr5:151087325-151087375	Hela-S3	cervix:	n/a
15	chr5:151087325-151087375	HUVEC	blood vessel:	n/a
16	chr5:151087325-151087375	HEK293	kidney:	embryo
17	chr5:151087325-151087375	HRPEpiC	eye:	n/a
18	chr5:151087325-151087375	NH-A	brain:	n/a
19	chr5:151087325-151087375	HCM	heart:	n/a
20	chr5:151087325-151087375	SK-N-SH	brain:	n/a
21	chr5:151087325-151087375	NHDF-neo	bronchial:	n/a
22	chr5:151087325-151087375	BJ	skin:	n/a
23	chr5:151087325-151087375	AG04449	skin:	fetal
24	chr5:151087325-151087375	AG04450	lung:	fetal
25	chr5:151087325-151087375	SKMC	muscle:	n/a
26	chr5:151087325-151087375	HL-60	blood:	n/a
27	chr5:151087325-151087375	ECC-1	luminal epithelium:	n/a
28	chr5:151087325-151087375	HepG2	liver:	n/a
29	chr5:151087325-151087375	NB4	blood:	n/a
30	chr5:151087325-151087375	SK-N-MC	brain:	n/a
31	chr5:151087325-151087375	GM12891	blood:	n/a
32	chr5:151087325-151087375	NHBE	bronchial:	n/a
33	chr5:151087325-151087375	HAEpiC	amniotic membrane:	n/a
34	chr5:151087325-151087375	LNCaP	prostate:	n/a
35	chr5:151087325-151087375	K562	blood:	n/a
36	chr5:151087325-151087375	HIPEpiC	eye:	n/a
37	chr5:151087325-151087375	PFSK-1	brain:	n/a
38	chr5:151087325-151087375	AoSMC	blood vessel:	n/a
39	chr5:151087325-151087375	HEEpiC	esophagus:	n/a
40	chr5:151087325-151087375	HNPCEpiC	eye:	n/a
41	chr5:151087325-151087375	MCF-7	breast:	n/a
42	chr5:151087325-151087375	IMR90	lung:	fetal
43	chr5:151087325-151087375	HCT-116	colon:	n/a
44	chr5:151087325-151087375	SK-N-SH_RA	brain:	n/a
45	chr5:151087325-151087375	HMEC	breast:	n/a
46	chr5:151087325-151087375	ProgFib	skin:	n/a
47	chr5:151087325-151087375	ovcar-3	ovarian:	n/a
48	chr5:151087325-151087375	SAEC	small airway:	n/a
49	chr5:151087325-151087375	Hepatocyte	liver:	n/a
50	chr5:151087325-151087375	HRE	kidney:	n/a

No data

Variant related genes	Relation type
RN7SKP232	TF binding region
RN7SKP232	CpG island

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10057658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10068356	0.81[AFR][1000 genomes]
rs13359692	0.81[AFR][1000 genomes]
rs13359696	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13362032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13436675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17741697	1.00[ASN][1000 genomes]
rs73794307	1.00[ASN][1000 genomes]
rs7701770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151079000-151097000	Weak transcription	Right Atrium	heart
2	chr5:151080800-151097000	Weak transcription	NHLF	lung
3	chr5:151081400-151087800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:151083000-151087800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr5:151084000-151088400	Weak transcription	K562	blood
6	chr5:151086000-151088200	Enhancers	Fetal Muscle Leg	muscle
7	chr5:151086400-151088000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:151086400-151088400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:151086400-151088400	Enhancers	HSMM	muscle
10	chr5:151086600-151088000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:151086600-151088200	Enhancers	HSMMtube	muscle
12	chr5:151086600-151088400	Enhancers	HUVEC	blood vessel
13	chr5:151086800-151087400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr5:151087000-151088000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr5:151087000-151088200	Enhancers	HepG2	liver
16	chr5:151087200-151087400	Enhancers	Spleen	Spleen
17	chr5:151087200-151087600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr5:151087200-151087600	Enhancers	Brain Cingulate Gyrus	brain
19	chr5:151087200-151087600	Enhancers	Duodenum Mucosa	Duodenum
20	chr5:151087200-151087600	Enhancers	Fetal Stomach	stomach
21	chr5:151087200-151087600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr5:151087200-151087600	Enhancers	Small Intestine	intestine
23	chr5:151087200-151087800	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr5:151087200-151087800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr5:151087200-151087800	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr5:151087200-151088000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr5:151087200-151088000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr5:151087200-151088000	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr5:151087200-151088000	Enhancers	Adipose Nuclei	Adipose
30	chr5:151087200-151088000	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr5:151087200-151088000	Enhancers	Fetal Intestine Small	intestine
32	chr5:151087200-151088000	Enhancers	Left Ventricle	heart
33	chr5:151087200-151088000	Enhancers	Ovary	ovary
34	chr5:151087200-151088000	Enhancers	Psoas Muscle	Psoas
35	chr5:151087200-151088000	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr5:151087200-151088000	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr5:151087200-151088200	Enhancers	Fetal Intestine Large	intestine
38	chr5:151087200-151088400	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr5:151087200-151088400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr5:151087200-151088400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr5:151087200-151088400	Enhancers	Hela-S3	cervix
42	chr5:151087200-151088600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr5:151087200-151089200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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