The 2.0 version of rSNPBase

Variant report

Variant rs17741697
Chromosome Location chr5:151077925-151077926
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:151067000-151078200 Weak transcription Fetal Thymus thymus
2 chr5:151067200-151078200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
3 chr5:151071600-151080800 Enhancers Fetal Adrenal Gland Adrenal Gland
4 chr5:151074000-151078400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr5:151074000-151078400 Weak transcription NHEK skin
6 chr5:151074600-151078200 Weak transcription Right Atrium heart
7 chr5:151074600-151078400 Enhancers Fetal Kidney kidney
8 chr5:151075000-151084200 Enhancers Fetal Intestine Large intestine
9 chr5:151075800-151080200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr5:151076000-151078400 Weak transcription Colon Smooth Muscle Colon
11 chr5:151076200-151078200 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr5:151076600-151078200 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr5:151076600-151078200 Weak transcription Duodenum Mucosa Duodenum
14 chr5:151076600-151078400 Enhancers ES-I3 Cell Line embryonic stem cell
15 chr5:151076600-151078400 Weak transcription Brain Hippocampus Middle brain
16 chr5:151076600-151078400 Weak transcription Placenta Placenta
17 chr5:151076600-151078400 Weak transcription A549 lung
18 chr5:151076600-151078600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
19 chr5:151076600-151078600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr5:151076600-151078800 Weak transcription iPS-20b Cell Line embryonic stem cell
21 chr5:151076600-151079600 Weak transcription GM12878-XiMat blood
22 chr5:151076600-151080600 Enhancers Fetal Stomach stomach
23 chr5:151076600-151082000 Weak transcription Psoas Muscle Psoas
24 chr5:151076600-151084200 Enhancers Fetal Muscle Leg muscle
25 chr5:151076800-151078200 Weak transcription HepG2 liver
26 chr5:151076800-151078400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr5:151076800-151078400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
28 chr5:151076800-151078400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr5:151076800-151078400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr5:151076800-151078400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr5:151076800-151078400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr5:151076800-151078400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr5:151076800-151078400 Weak transcription Brain Angular Gyrus brain
34 chr5:151076800-151078400 Weak transcription Brain Anterior Caudate brain
35 chr5:151076800-151078400 Weak transcription Brain Cingulate Gyrus brain
36 chr5:151076800-151078400 Weak transcription Brain Substantia Nigra brain
37 chr5:151076800-151078600 Weak transcription H9 Cell Line embryonic stem cell
38 chr5:151076800-151078600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
39 chr5:151076800-151078600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
40 chr5:151076800-151078800 Weak transcription Brain Inferior Temporal Lobe brain
41 chr5:151076800-151079000 Enhancers HSMMtube muscle
42 chr5:151076800-151079000 Enhancers NHDF-Ad bronchial
43 chr5:151076800-151079800 Enhancers Fetal Muscle Trunk muscle
44 chr5:151077000-151078400 Weak transcription Rectal Smooth Muscle rectum
45 chr5:151077200-151078200 Weak transcription HUES6 Cell Line embryonic stem cell
46 chr5:151077200-151078200 Weak transcription Fetal Lung lung
47 chr5:151077200-151078200 Weak transcription HMEC breast
48 chr5:151077200-151078400 Weak transcription HUES48 Cell Line embryonic stem cell
49 chr5:151077200-151078400 Weak transcription HUES64 Cell Line embryonic stem cell
50 chr5:151077200-151078400 Weak transcription iPS-15b Cell Line embryonic stem cell

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Last update: Aug 31, 2015