Variant report

Variant	rs10057658
Chromosome Location	chr5:151086986-151086987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr5:151086329-151087027	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
RN7SKP232	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10068356	0.81[AFR][1000 genomes]
rs10476773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13359692	0.81[AFR][1000 genomes]
rs13359696	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13362032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13436675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17741697	1.00[ASN][1000 genomes]
rs73794307	1.00[ASN][1000 genomes]
rs7701770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151077600-151087200	Weak transcription	Spleen	Spleen
2	chr5:151079000-151097000	Weak transcription	Right Atrium	heart
3	chr5:151080800-151087200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:151080800-151087200	Weak transcription	Adipose Nuclei	Adipose
5	chr5:151080800-151097000	Weak transcription	NHLF	lung
6	chr5:151081200-151087200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:151081400-151087800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:151082800-151087200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:151082800-151087200	Weak transcription	Fetal Stomach	stomach
10	chr5:151082800-151087200	Weak transcription	Psoas Muscle	Psoas
11	chr5:151082800-151087200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr5:151083000-151087200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr5:151083000-151087200	Weak transcription	Left Ventricle	heart
14	chr5:151083000-151087800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr5:151083200-151087200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr5:151084000-151087200	Weak transcription	Small Intestine	intestine
17	chr5:151084000-151088400	Weak transcription	K562	blood
18	chr5:151084200-151087200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr5:151084200-151087200	Weak transcription	Fetal Intestine Large	intestine
20	chr5:151084200-151087200	Weak transcription	Fetal Intestine Small	intestine
21	chr5:151084200-151087200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr5:151084600-151087000	Weak transcription	HepG2	liver
23	chr5:151086000-151088200	Enhancers	Fetal Muscle Leg	muscle
24	chr5:151086400-151088000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr5:151086400-151088400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr5:151086400-151088400	Enhancers	HSMM	muscle
27	chr5:151086600-151087200	Weak transcription	Lung	lung
28	chr5:151086600-151088000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr5:151086600-151088200	Enhancers	HSMMtube	muscle
30	chr5:151086600-151088400	Enhancers	HUVEC	blood vessel
31	chr5:151086800-151087200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr5:151086800-151087400	Enhancers	Skeletal Muscle Female	skeletal muscle

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