Variant report

Variant	rs17741838
Chromosome Location	chr5:151166332-151166333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:151164681..151166683-chr5:151167760..151170688,3	K562	blood:
2	chr5:151164080..151166374-chr5:151167044..151170851,3	K562	blood:
3	chr5:151164141..151166497-chr5:151174863..151177612,2	MCF-7	breast:
4	chr5:151151210..151153371-chr5:151165047..151166781,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145907	Chromatin interaction
ENSG00000177556	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13362032	1.00[GIH][hapmap]
rs17096163	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17112252	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17112288	1.00[ASN][1000 genomes]
rs28917175	1.00[ASN][1000 genomes]
rs57637894	1.00[AFR][1000 genomes]
rs57863201	1.00[ASN][1000 genomes]
rs6579911	0.80[AFR][1000 genomes]
rs6867160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6891463	0.80[AFR][1000 genomes]
rs73285940	1.00[ASN][1000 genomes]
rs73285957	1.00[ASN][1000 genomes]
rs73285959	1.00[ASN][1000 genomes]
rs73285980	1.00[ASN][1000 genomes]
rs7701770	1.00[GIH][hapmap]
rs7712774	1.00[ASW][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap]
rs7731695	0.80[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17741838	GAS2	trans	lymphoblastoid	seeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151153000-151167400	Weak transcription	Esophagus	oesophagus
2	chr5:151153000-151167400	Weak transcription	Lung	lung
3	chr5:151153000-151167600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:151153800-151166800	Weak transcription	Colonic Mucosa	Colon
5	chr5:151153800-151167400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:151153800-151169800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:151154400-151168800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:151154400-151169000	Weak transcription	HSMMtube	muscle
9	chr5:151154600-151168800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:151155200-151167600	Weak transcription	Spleen	Spleen
11	chr5:151155800-151167400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr5:151155800-151172200	Weak transcription	Aorta	Aorta
13	chr5:151155800-151177000	Weak transcription	Fetal Brain Male	brain
14	chr5:151156200-151167800	Weak transcription	Brain Germinal Matrix	brain
15	chr5:151156800-151166800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr5:151156800-151168200	Weak transcription	NHLF	lung
17	chr5:151157400-151167200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr5:151158000-151167200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr5:151158000-151168800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr5:151158200-151167200	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr5:151158200-151171200	Weak transcription	Right Ventricle	heart
22	chr5:151158600-151167600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr5:151158800-151166600	Weak transcription	Fetal Intestine Large	intestine
24	chr5:151158800-151167200	Weak transcription	Fetal Muscle Leg	muscle
25	chr5:151158800-151167400	Weak transcription	Pancreas	Pancrea
26	chr5:151159000-151166800	Weak transcription	HMEC	breast
27	chr5:151160400-151168200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr5:151160400-151168200	Weak transcription	Gastric	stomach
29	chr5:151160400-151169400	Weak transcription	Right Atrium	heart
30	chr5:151161200-151166800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr5:151161200-151170400	Weak transcription	Brain Anterior Caudate	brain
32	chr5:151161400-151170400	Weak transcription	Brain Substantia Nigra	brain
33	chr5:151161600-151167400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr5:151161600-151169000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr5:151161600-151169000	Weak transcription	Brain Angular Gyrus	brain
36	chr5:151162200-151167600	Weak transcription	Fetal Brain Female	brain
37	chr5:151162200-151169000	Weak transcription	NHDF-Ad	bronchial
38	chr5:151163800-151167400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr5:151164000-151169200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr5:151164000-151187800	Weak transcription	Stomach Mucosa	stomach
41	chr5:151164000-151196600	Strong transcription	Hela-S3	cervix
42	chr5:151164000-151207600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr5:151164200-151166800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr5:151164400-151189400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr5:151164400-151194800	Strong transcription	Dnd41	blood
46	chr5:151164600-151197000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr5:151164800-151167000	Strong transcription	K562	blood
48	chr5:151164800-151167400	Weak transcription	Fetal Kidney	kidney
49	chr5:151164800-151171200	Weak transcription	Small Intestine	intestine
50	chr5:151164800-151196600	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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