Variant report

Variant	rs17112288
Chromosome Location	chr5:151238954-151238955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17096163	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17112252	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17741838	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28917175	1.00[ASN][1000 genomes]
rs57863201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60428483	0.94[AFR][1000 genomes]
rs6867160	1.00[ASN][1000 genomes]
rs73285940	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73285944	0.94[AFR][1000 genomes]
rs73285947	0.94[AFR][1000 genomes]
rs73285957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73285959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73285972	0.80[AFR][1000 genomes]
rs73285974	0.80[AFR][1000 genomes]
rs73285980	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808837	chr5:151238149-151260215	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151231200-151242800	Weak transcription	Aorta	Aorta
2	chr5:151235200-151264200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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