Variant report
| Variant | rs57863201 |
|---|---|
| Chromosome Location | chr5:151247681-151247682 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:151237615..151239787-chr5:151247109..151248948,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs17096163 | 1.00[ASN][1000 genomes] |
| rs17112252 | 1.00[ASN][1000 genomes] |
| rs17112288 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17741838 | 1.00[ASN][1000 genomes] |
| rs28917175 | 1.00[ASN][1000 genomes] |
| rs60428483 | 0.94[AFR][1000 genomes] |
| rs6867160 | 1.00[ASN][1000 genomes] |
| rs73285940 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73285944 | 0.94[AFR][1000 genomes] |
| rs73285947 | 0.94[AFR][1000 genomes] |
| rs73285957 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73285959 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73285972 | 0.80[AFR][1000 genomes] |
| rs73285974 | 0.80[AFR][1000 genomes] |
| rs73285980 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1808837 | chr5:151238149-151260215 | Enhancers Weak transcription | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv1807514 | chr5:151242208-151252867 | Enhancers Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv1807896 | chr5:151242208-151252867 | Weak transcription Enhancers | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv1808791 | chr5:151242208-151252867 | Enhancers Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv1808872 | chr5:151242208-151252867 | Enhancers Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:151235200-151264200 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
