Variant report

Variant	rs17112342
Chromosome Location	chr10:98806512-98806513
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98805546..98807269-chr10:98807470..98810289,2	K562	blood:
2	chr10:98801158..98803670-chr10:98805230..98808659,3	K562	blood:
3	chr10:98798423..98800603-chr10:98804421..98806912,2	MCF-7	breast:
4	chr10:98801964..98805154-chr10:98805230..98807227,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11188997	0.89[ASN][1000 genomes]
rs11188998	0.91[ASN][1000 genomes]
rs11595198	0.91[ASN][1000 genomes]
rs11595411	0.83[ASN][1000 genomes]
rs2279507	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2805591	0.83[ASN][1000 genomes]
rs34511307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60670419	0.88[ASN][1000 genomes]
rs61864170	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61864171	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61864173	0.91[ASN][1000 genomes]
rs61864175	0.91[ASN][1000 genomes]
rs7902871	0.86[ASN][1000 genomes]
rs871992	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs902470	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1037576	chr10:98791099-98873649	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv895912	chr10:98794615-98838694	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1039568	chr10:98800844-98868329	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1040262	chr10:98805336-98872134	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98793000-98810600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:98797800-98807600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:98797800-98830800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:98798000-98810000	Weak transcription	Right Atrium	heart
5	chr10:98798000-98811200	Strong transcription	Fetal Thymus	thymus
6	chr10:98798000-98818000	Weak transcription	Brain Angular Gyrus	brain
7	chr10:98798000-98818000	Weak transcription	Brain Anterior Caudate	brain
8	chr10:98798200-98806600	Weak transcription	Fetal Brain Male	brain
9	chr10:98798200-98809800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:98798200-98812600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:98798200-98819200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr10:98798600-98807800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:98798800-98806800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:98799400-98809400	Strong transcription	Brain Germinal Matrix	brain
15	chr10:98802200-98809600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr10:98803000-98808000	Weak transcription	Fetal Brain Female	brain
17	chr10:98803400-98807800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:98805200-98810000	Strong transcription	Thymus	Thymus
19	chr10:98805800-98806800	Bivalent Enhancer	Fetal Stomach	stomach
20	chr10:98806000-98806600	Enhancers	Left Ventricle	heart
21	chr10:98806000-98806800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:98806000-98806800	Enhancers	Fetal Lung	lung
23	chr10:98806000-98807400	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr10:98806200-98807000	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr10:98806200-98807400	Enhancers	Fetal Muscle Leg	muscle
26	chr10:98806400-98806600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:98806400-98807400	Enhancers	Fetal Muscle Trunk	muscle

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