Variant report

Variant	rs17112398
Chromosome Location	chr5:151327514-151327515
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1549618	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1990944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958286	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4958288	0.87[ASN][1000 genomes]
rs4958502	1.00[CHB][hapmap]
rs60257838	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870218	0.80[EUR][1000 genomes]
rs7711643	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531994	chr5:151292664-151331097	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151324000-151331600	Weak transcription	Right Atrium	heart
2	chr5:151326400-151327600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:151326400-151329000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:151326800-151330600	Enhancers	HMEC	breast
5	chr5:151327000-151328200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr5:151327000-151328400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:151327200-151327600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:151327200-151327800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:151327200-151328200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr5:151327200-151328400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:151327200-151330000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:151327400-151327600	Enhancers	HSMMtube	muscle
13	chr5:151327400-151327800	Enhancers	NHEK	skin
14	chr5:151327400-151328200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr5:151327400-151328200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr5:151327400-151328400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:151327400-151328800	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr5:151327400-151328800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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