Variant report

Variant	rs1549618
Chromosome Location	chr5:151306937-151306938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11740638	0.93[EUR][1000 genomes]
rs12188534	0.89[EUR][1000 genomes]
rs13186058	0.93[EUR][1000 genomes]
rs17112398	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1990944	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4958286	0.87[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4958287	0.93[EUR][1000 genomes]
rs4958288	1.00[ASN][1000 genomes]
rs4958502	0.88[ASW][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs4958504	0.84[EUR][1000 genomes]
rs4958505	0.86[EUR][1000 genomes]
rs60257838	0.87[ASN][1000 genomes]
rs6579914	0.80[CEU][hapmap];0.88[EUR][1000 genomes]
rs748463	0.88[EUR][1000 genomes]
rs7710098	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7711643	0.87[ASN][1000 genomes]
rs7714371	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531994	chr5:151292664-151331097	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1549618	GEMIN5	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151305000-151307000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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