Variant report

Variant	rs13186058
Chromosome Location	chr5:151330830-151330831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11740638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12188534	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1549618	0.85[CEU][hapmap];0.86[TSI][hapmap];0.93[EUR][1000 genomes]
rs4958287	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4958504	0.91[EUR][1000 genomes]
rs4958505	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6579914	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs748463	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7710098	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531994	chr5:151292664-151331097	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13186058	GEMIN5	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151324000-151331600	Weak transcription	Right Atrium	heart
2	chr5:151327800-151335000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:151328200-151331800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr5:151328200-151333400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:151328200-151334000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr5:151329800-151337400	Weak transcription	Fetal Muscle Leg	muscle
7	chr5:151330000-151332800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:151330600-151332600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:151330600-151333000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr5:151330600-151333600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr5:151330600-151335000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr5:151330800-151333400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr5:151330800-151333800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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