Variant report

Variant	rs4958504
Chromosome Location	chr5:151343850-151343851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11740638	0.91[EUR][1000 genomes]
rs12188534	0.94[EUR][1000 genomes]
rs13186058	0.91[EUR][1000 genomes]
rs1549618	0.84[EUR][1000 genomes]
rs4958287	0.90[EUR][1000 genomes]
rs4958505	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6579914	0.81[CEU][hapmap];0.90[EUR][1000 genomes]
rs748463	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7710098	0.84[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4958504	DCTN4	cis	cerebellum	SCAN
rs4958504	GEMIN5	cis	parietal	SCAN
rs4958504	PDE6A	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151341000-151344600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:151341600-151344000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:151341800-151344000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr5:151341800-151344000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:151342000-151344200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links