Variant report

Variant	rs17112735
Chromosome Location	chr1:56207532-56207533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12095642	0.88[ASN][1000 genomes]
rs12564896	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112758	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17112768	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1926909	0.88[ASN][1000 genomes]
rs3972660	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57681335	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57986462	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59332651	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59605437	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
2	nsv546304	chr1:56195659-56240015	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56186400-56207600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:56205600-56207800	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:56206200-56208400	Enhancers	NHDF-Ad	bronchial
4	chr1:56206400-56207600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:56206400-56207800	Enhancers	Fetal Lung	lung
6	chr1:56206400-56208200	Enhancers	NHLF	lung
7	chr1:56206400-56208400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:56206600-56207800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:56206600-56208200	Enhancers	Brain Substantia Nigra	brain
10	chr1:56206600-56208400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:56206800-56207800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr1:56206800-56207800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr1:56206800-56208200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr1:56206800-56208200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr1:56207000-56207600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr1:56207000-56207600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr1:56207000-56207600	Weak transcription	Fetal Stomach	stomach
18	chr1:56207000-56207800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr1:56207000-56208200	Enhancers	Adipose Nuclei	Adipose
20	chr1:56207200-56207800	Enhancers	Fetal Muscle Leg	muscle
21	chr1:56207400-56207800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr1:56207400-56208000	Enhancers	Brain Cingulate Gyrus	brain
23	chr1:56207400-56208200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr1:56207400-56208200	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links