Variant report

Variant	rs1926909
Chromosome Location	chr1:56243352-56243353
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11206663	0.80[EUR][1000 genomes]
rs12095642	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12564896	0.88[ASN][1000 genomes]
rs17112735	0.88[ASN][1000 genomes]
rs17112758	0.88[ASN][1000 genomes]
rs17112768	0.88[ASN][1000 genomes]
rs3972660	0.83[ASN][1000 genomes]
rs57681335	0.84[ASN][1000 genomes]
rs57986462	0.88[ASN][1000 genomes]
rs59332651	0.88[ASN][1000 genomes]
rs59605437	0.88[ASN][1000 genomes]
rs749330	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1926909	PODN	cis	cerebellum	SCAN
rs1926909	FGGY	cis	cerebellum	SCAN
rs1926909	C1orf168	cis	parietal	SCAN
rs1926909	MYSM1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56242600-56247400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:56243200-56247400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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