Variant report

Variant	rs17113742
Chromosome Location	chr14:43462889-43462890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:43461882..43464212-chr3:67277792..67280418,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs17113623	0.85[AMR][1000 genomes]
rs4277267	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4562978	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57196179	0.83[AFR][1000 genomes]
rs57335019	0.83[AFR][1000 genomes]
rs57814707	0.83[AFR][1000 genomes]
rs57898509	0.83[AFR][1000 genomes]
rs58068262	0.83[AFR][1000 genomes]
rs58110789	0.83[AFR][1000 genomes]
rs58312161	0.83[AFR][1000 genomes]
rs59454897	0.83[AFR][1000 genomes]
rs60446553	0.83[AFR][1000 genomes]
rs60815694	0.83[AFR][1000 genomes]
rs61175684	0.83[AFR][1000 genomes]
rs7149280	0.85[AMR][1000 genomes]
rs73330466	0.87[AFR][1000 genomes]
rs73330468	0.80[AFR][1000 genomes]
rs73330472	0.80[AFR][1000 genomes]
rs73330491	0.83[AFR][1000 genomes]
rs73332404	0.83[AFR][1000 genomes]
rs73332411	0.83[AFR][1000 genomes]
rs73332413	0.83[AFR][1000 genomes]
rs73332415	0.83[AFR][1000 genomes]
rs73332418	0.83[AFR][1000 genomes]
rs73332421	0.83[AFR][1000 genomes]
rs73332427	0.83[AFR][1000 genomes]
rs73332429	0.83[AFR][1000 genomes]
rs73332431	0.83[AFR][1000 genomes]
rs73332433	0.83[AFR][1000 genomes]
rs73332436	0.83[AFR][1000 genomes]
rs73332440	0.83[AFR][1000 genomes]
rs73332443	0.83[AFR][1000 genomes]
rs73332444	0.83[AFR][1000 genomes]
rs73332451	0.83[AFR][1000 genomes]
rs73332453	0.83[AFR][1000 genomes]
rs73332456	0.83[AFR][1000 genomes]
rs73332458	0.83[AFR][1000 genomes]
rs73332460	0.83[AFR][1000 genomes]
rs73332461	0.83[AFR][1000 genomes]
rs73332463	0.83[AFR][1000 genomes]
rs73332464	0.83[AFR][1000 genomes]
rs73332465	0.83[AFR][1000 genomes]
rs73332470	0.83[AFR][1000 genomes]
rs8015180	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564618	chr14:43056649-43773651	Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv430996	chr14:43140250-43829050	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1048877	chr14:43167329-43863100	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv832780	chr14:43310670-43496959	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv901759	chr14:43317669-43512251	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1049409	chr14:43342305-43978776	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv527004	chr14:43392107-43555789	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1049284	chr14:43400494-43948072	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1050032	chr14:43428721-43466768	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv2760347	chr14:43443334-43466780	Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3431895	chr14:43450251-43504396	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv564625	chr14:43460115-43490932	ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:43462200-43463600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr14:43462400-43463600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr14:43462800-43464200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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