Variant report

Variant	rs4562978
Chromosome Location	chr14:43472733-43472734
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs17113623	0.85[AMR][1000 genomes]
rs17113742	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4277267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57196179	0.83[AFR][1000 genomes]
rs57335019	0.83[AFR][1000 genomes]
rs57814707	0.83[AFR][1000 genomes]
rs57898509	0.83[AFR][1000 genomes]
rs58068262	0.83[AFR][1000 genomes]
rs58110789	0.83[AFR][1000 genomes]
rs58312161	0.83[AFR][1000 genomes]
rs59454897	0.83[AFR][1000 genomes]
rs60446553	0.83[AFR][1000 genomes]
rs60815694	0.83[AFR][1000 genomes]
rs61175684	0.83[AFR][1000 genomes]
rs7149280	0.85[AMR][1000 genomes]
rs73330466	0.83[AFR][1000 genomes]
rs73330491	0.83[AFR][1000 genomes]
rs73332404	0.83[AFR][1000 genomes]
rs73332411	0.83[AFR][1000 genomes]
rs73332413	0.83[AFR][1000 genomes]
rs73332415	0.83[AFR][1000 genomes]
rs73332418	0.83[AFR][1000 genomes]
rs73332421	0.83[AFR][1000 genomes]
rs73332427	0.83[AFR][1000 genomes]
rs73332429	0.83[AFR][1000 genomes]
rs73332431	0.83[AFR][1000 genomes]
rs73332433	0.83[AFR][1000 genomes]
rs73332436	0.83[AFR][1000 genomes]
rs73332440	0.83[AFR][1000 genomes]
rs73332443	0.83[AFR][1000 genomes]
rs73332444	0.83[AFR][1000 genomes]
rs73332451	0.83[AFR][1000 genomes]
rs73332453	0.83[AFR][1000 genomes]
rs73332456	0.83[AFR][1000 genomes]
rs73332458	0.83[AFR][1000 genomes]
rs73332460	0.83[AFR][1000 genomes]
rs73332461	0.83[AFR][1000 genomes]
rs73332463	0.83[AFR][1000 genomes]
rs73332464	0.83[AFR][1000 genomes]
rs73332465	0.83[AFR][1000 genomes]
rs73332470	0.83[AFR][1000 genomes]
rs8015180	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564618	chr14:43056649-43773651	Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv430996	chr14:43140250-43829050	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1048877	chr14:43167329-43863100	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv832780	chr14:43310670-43496959	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv901759	chr14:43317669-43512251	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1049409	chr14:43342305-43978776	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv527004	chr14:43392107-43555789	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1049284	chr14:43400494-43948072	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3431895	chr14:43450251-43504396	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv564625	chr14:43460115-43490932	ZNF genes & repeats Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv901765	chr14:43463396-43537857	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv983944	chr14:43469794-43481341	ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv832782	chr14:43470370-43620110	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1035264	chr14:43470467-43901187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv542064	chr14:43470467-43901187	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:43472600-43473600	ZNF genes & repeats	Adipose Nuclei	Adipose

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