Variant report

Variant	rs17116027
Chromosome Location	chr1:97417539-97417540
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1489806	1.00[AMR][1000 genomes]
rs17115970	1.00[AMR][1000 genomes]
rs17115981	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17115983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17116008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17116031	1.00[AMR][1000 genomes]
rs17116059	1.00[AMR][1000 genomes]
rs17116150	1.00[AMR][1000 genomes]
rs17116189	1.00[AMR][1000 genomes]
rs17116309	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv870494	chr1:97334219-97439491	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:97417000-97417800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:97417400-97417800	Enhancers	Brain Anterior Caudate	brain
3	chr1:97417400-97420200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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