Variant report

Variant	rs17116059
Chromosome Location	chr1:97428691-97428692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1489806	1.00[AMR][1000 genomes]
rs17115970	1.00[AMR][1000 genomes]
rs17115981	1.00[AMR][1000 genomes]
rs17115983	1.00[AMR][1000 genomes]
rs17116008	1.00[AMR][1000 genomes]
rs17116027	1.00[AMR][1000 genomes]
rs17116031	1.00[AMR][1000 genomes]
rs17116150	1.00[AMR][1000 genomes]
rs17116189	1.00[AMR][1000 genomes]
rs17116309	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv870494	chr1:97334219-97439491	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:97427200-97428800	Enhancers	Fetal Stomach	stomach
2	chr1:97427600-97428800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:97427600-97429400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:97427600-97430000	Enhancers	Rectal Smooth Muscle	rectum
5	chr1:97428000-97428800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:97428000-97429000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:97428000-97429200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:97428000-97433800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr1:97428400-97429000	Enhancers	Fetal Brain Male	brain
10	chr1:97428600-97428800	Enhancers	Fetal Lung	lung
11	chr1:97428600-97429000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:97428600-97432400	Weak transcription	Osteobl	bone
13	chr1:97428600-97433000	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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