Variant report

Variant	rs17116098
Chromosome Location	chr14:72929226-72929227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10136417	1.00[MEX][hapmap]
rs11844081	1.00[EUR][1000 genomes]
rs17116077	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17116719	1.00[MEX][hapmap]
rs55715621	1.00[EUR][1000 genomes]
rs56049400	1.00[EUR][1000 genomes]
rs56835193	1.00[EUR][1000 genomes]
rs74060785	1.00[EUR][1000 genomes]
rs74060786	1.00[EUR][1000 genomes]
rs74060789	1.00[EUR][1000 genomes]
rs8006716	1.00[MEX][hapmap]
rs8010179	1.00[EUR][1000 genomes]
rs8010353	1.00[EUR][1000 genomes]
rs8016510	1.00[EUR][1000 genomes]
rs8017005	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72918000-72930000	Weak transcription	Right Atrium	heart
2	chr14:72918200-72930000	Weak transcription	Left Ventricle	heart
3	chr14:72919000-72931400	Weak transcription	Adipose Nuclei	Adipose
4	chr14:72919400-72945200	Weak transcription	Brain Germinal Matrix	brain
5	chr14:72923800-72946200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:72924800-72930000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:72924800-72930000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:72925200-72930000	Weak transcription	NH-A	brain
9	chr14:72925400-72930200	Weak transcription	NHLF	lung
10	chr14:72926000-72930000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr14:72927800-72929600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:72928000-72929800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr14:72928600-72929400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr14:72928600-72930800	Enhancers	HSMMtube	muscle
15	chr14:72928800-72929600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:72929200-72930200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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