Variant report

Variant	rs56835193
Chromosome Location	chr14:72868562-72868563
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11844081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17116077	1.00[EUR][1000 genomes]
rs17116098	1.00[EUR][1000 genomes]
rs55715621	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56049400	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74060785	1.00[EUR][1000 genomes]
rs74060786	1.00[EUR][1000 genomes]
rs74060789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8010179	1.00[EUR][1000 genomes]
rs8010353	1.00[EUR][1000 genomes]
rs8016510	1.00[EUR][1000 genomes]
rs8017005	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72861000-72873400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72862200-72870800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:72867000-72869600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr14:72867400-72868600	Enhancers	Dnd41	blood
5	chr14:72867400-72868800	Enhancers	Fetal Brain Male	brain
6	chr14:72867400-72869000	Enhancers	Fetal Muscle Leg	muscle
7	chr14:72867400-72870000	Enhancers	Primary hematopoietic stem cells	blood
8	chr14:72867400-72870000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr14:72867600-72869000	Enhancers	Fetal Lung	lung
10	chr14:72868000-72868600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr14:72868000-72868800	Enhancers	Primary T cells fromperipheralblood	blood
12	chr14:72868000-72869200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:72868200-72869000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr14:72868200-72869000	Enhancers	Fetal Thymus	thymus
15	chr14:72868400-72868800	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr14:72868400-72868800	Enhancers	Fetal Brain Female	brain
17	chr14:72868400-72869000	Enhancers	Primary T cells from cord blood	blood
18	chr14:72868400-72869200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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