Variant report

Variant	rs17116991
Chromosome Location	chr5:154516265-154516266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10515721	0.84[ASN][1000 genomes]
rs12513810	0.94[ASN][1000 genomes]
rs17652353	1.00[EUR][1000 genomes]
rs59619175	0.90[EUR][1000 genomes]
rs60802793	0.94[ASN][1000 genomes]
rs6878818	0.82[ASN][1000 genomes]
rs9324807	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv462492	chr5:154489393-154523910	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv600091	chr5:154489393-154523910	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154513400-154517200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:154515200-154517200	Enhancers	Fetal Heart	heart
3	chr5:154515800-154516600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:154516000-154516400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr5:154516000-154516400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:154516000-154516400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr5:154516000-154519000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:154516200-154518800	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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