Variant report

Variant	rs17118270
Chromosome Location	chr1:59306810-59306811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:59243405..59252620-chr1:59299418..59311853,24	K562	blood:
2	chr1:59300670..59305165-chr1:59305203..59308556,4	K562	blood:
3	chr1:59243279..59246894-chr1:59305976..59310212,4	K562	blood:
4	chr1:59284500..59286757-chr1:59305758..59307631,2	K562	blood:
5	chr1:59247870..59251068-chr1:59306133..59308836,4	MCF-7	breast:
6	chr1:59246945..59249154-chr1:59305966..59308006,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-JUN-1	chr1:59306769-59306891	ENSG00000231740

No data

No data

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6675607	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005354	chr1:59283572-59535812	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1014087	chr1:59286306-59334393	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59294000-59311000	Weak transcription	Gastric	stomach
2	chr1:59300600-59314800	Weak transcription	Aorta	Aorta
3	chr1:59303400-59308200	Enhancers	NHDF-Ad	bronchial
4	chr1:59304000-59307000	Weak transcription	Lung	lung
5	chr1:59304600-59308000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:59304800-59307600	Enhancers	NHLF	lung
7	chr1:59304800-59308000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:59304800-59308200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:59305200-59307400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr1:59305400-59307000	Enhancers	HMEC	breast
11	chr1:59305800-59307000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:59306200-59308200	Enhancers	Stomach Mucosa	stomach
13	chr1:59306400-59307200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:59306600-59307000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:59306600-59314000	Weak transcription	Osteobl	bone
16	chr1:59306800-59307200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:59306800-59307200	Weak transcription	A549	lung
18	chr1:59306800-59313200	Weak transcription	NHEK	skin
19	chr1:59306800-59314000	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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