Variant report

Variant	rs6675607
Chromosome Location	chr1:59262176-59262177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:59247381..59251002-chr1:59261018..59264261,5	MCF-7	breast:
2	chr1:59257902..59260116-chr1:59260155..59262802,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FGGY-5	chr1:59261827-59262369	NONHSAT003530

Variant related genes	Relation type
ENSG00000234807	Chromatin interaction
ENSG00000177606	Chromatin interaction

rs_ID	r²[population]
rs10889120	1.00[MEX][hapmap]
rs17118270	0.95[AFR][1000 genomes]
rs2746080	1.00[MEX][hapmap]
rs2811892	1.00[MEX][hapmap]
rs522103	1.00[MEX][hapmap]
rs586509	1.00[MEX][hapmap]
rs6656813	1.00[MEX][hapmap]
rs6703586	0.81[LWK][hapmap];1.00[MEX][hapmap]
rs678283	1.00[MEX][hapmap]

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59251400-59275000	Weak transcription	Ovary	ovary
2	chr1:59251400-59279200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:59251800-59264400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:59251800-59265000	Weak transcription	Stomach Mucosa	stomach
5	chr1:59251800-59277200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr1:59251800-59278200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:59252200-59264400	Weak transcription	Brain Hippocampus Middle	brain
8	chr1:59252800-59268600	Weak transcription	Pancreas	Pancrea
9	chr1:59253000-59278000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr1:59254000-59281000	Weak transcription	Brain Substantia Nigra	brain
11	chr1:59254400-59271600	Weak transcription	Primary T cells from cord blood	blood
12	chr1:59257000-59271400	Weak transcription	Esophagus	oesophagus
13	chr1:59257200-59278000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr1:59259000-59264600	Weak transcription	Fetal Heart	heart
15	chr1:59260200-59277800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr1:59260600-59275200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr1:59260600-59278000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr1:59261000-59270600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr1:59261600-59263800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:59261600-59268600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr1:59261600-59271000	Weak transcription	Primary B cells from cord blood	blood
22	chr1:59261800-59262600	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr1:59261800-59270000	Weak transcription	Psoas Muscle	Psoas
24	chr1:59262000-59262200	Enhancers	NHEK	skin
25	chr1:59262000-59262400	Enhancers	Duodenum Mucosa	Duodenum
26	chr1:59262000-59262400	Enhancers	Placenta Amnion	Placenta Amnion

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