The 2.0 version of rSNPBase

Variant report

Variant rs6703586
Chromosome Location chr1:59270542-59270543
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59251400-59275000 Weak transcription Ovary ovary
2 chr1:59251400-59279200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr1:59251800-59277200 Weak transcription Primary T cells fromperipheralblood blood
4 chr1:59251800-59278200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
5 chr1:59253000-59278000 Weak transcription Primary T helper cells PMA-I stimulated --
6 chr1:59254000-59281000 Weak transcription Brain Substantia Nigra brain
7 chr1:59254400-59271600 Weak transcription Primary T cells from cord blood blood
8 chr1:59257000-59271400 Weak transcription Esophagus oesophagus
9 chr1:59257200-59278000 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr1:59260200-59277800 Weak transcription Primary T helper naive cells fromperipheralblood blood
11 chr1:59260600-59275200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
12 chr1:59260600-59278000 Weak transcription Primary T helper cells fromperipheralblood blood
13 chr1:59261000-59270600 Weak transcription Primary B cells from peripheral blood blood
14 chr1:59261600-59271000 Weak transcription Primary B cells from cord blood blood
15 chr1:59262400-59274600 Weak transcription Placenta Amnion Placenta Amnion
16 chr1:59263400-59278200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
17 chr1:59264800-59275000 Weak transcription Brain Cingulate Gyrus brain
18 chr1:59265000-59280400 Weak transcription Brain Hippocampus Middle brain
19 chr1:59265400-59278600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
20 chr1:59265400-59279200 Weak transcription ES-I3 Cell Line embryonic stem cell
21 chr1:59267400-59272200 Enhancers Stomach Mucosa stomach
22 chr1:59268000-59272600 Enhancers Fetal Intestine Large intestine
23 chr1:59268400-59272600 Enhancers Fetal Intestine Small intestine
24 chr1:59268600-59271400 Enhancers Rectal Mucosa Donor 31 rectum
25 chr1:59268600-59280400 Weak transcription Colon Smooth Muscle Colon
26 chr1:59268800-59274000 Weak transcription Aorta Aorta
27 chr1:59269000-59270600 Weak transcription Gastric stomach
28 chr1:59269000-59270600 Weak transcription Sigmoid Colon Sigmoid Colon
29 chr1:59269000-59274600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr1:59269000-59274600 Weak transcription HMEC breast
31 chr1:59269000-59275000 Weak transcription Pancreas Pancrea
32 chr1:59269400-59270800 Weak transcription Liver Liver
33 chr1:59269400-59271600 Weak transcription Pancreatic Islets Pancreatic Islet
34 chr1:59269400-59274800 Weak transcription Breast Myoepithelial Primary Cells Breast
35 chr1:59270000-59270800 Enhancers Fetal Muscle Leg muscle
36 chr1:59270000-59270800 Enhancers Psoas Muscle Psoas
37 chr1:59270000-59272000 Weak transcription Rectal Smooth Muscle rectum
38 chr1:59270000-59272600 Enhancers Duodenum Mucosa Duodenum
39 chr1:59270000-59272600 Enhancers HepG2 liver
40 chr1:59270200-59270800 Enhancers Colonic Mucosa Colon
41 chr1:59270200-59270800 Enhancers Skeletal Muscle Male skeletal muscle
42 chr1:59270200-59271000 Enhancers Skeletal Muscle Female skeletal muscle
43 chr1:59270200-59271600 Enhancers Hela-S3 cervix
44 chr1:59270200-59280000 Weak transcription Stomach Smooth Muscle stomach
45 chr1:59270400-59270600 Enhancers iPS-15b Cell Line embryonic stem cell
46 chr1:59270400-59270800 Flanking Active TSS Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015