The 2.0 version of rSNPBase

Variant report

Variant rs1923943
Chromosome Location chr1:59275576-59275577
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59251400-59279200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr1:59251800-59277200 Weak transcription Primary T cells fromperipheralblood blood
3 chr1:59251800-59278200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
4 chr1:59253000-59278000 Weak transcription Primary T helper cells PMA-I stimulated --
5 chr1:59254000-59281000 Weak transcription Brain Substantia Nigra brain
6 chr1:59257200-59278000 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr1:59260200-59277800 Weak transcription Primary T helper naive cells fromperipheralblood blood
8 chr1:59260600-59278000 Weak transcription Primary T helper cells fromperipheralblood blood
9 chr1:59263400-59278200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
10 chr1:59265000-59280400 Weak transcription Brain Hippocampus Middle brain
11 chr1:59265400-59278600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr1:59265400-59279200 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr1:59268600-59280400 Weak transcription Colon Smooth Muscle Colon
14 chr1:59270200-59280000 Weak transcription Stomach Smooth Muscle stomach
15 chr1:59270600-59276200 Enhancers Primary B cells from peripheral blood blood
16 chr1:59270600-59279400 Weak transcription Right Ventricle heart
17 chr1:59271000-59279200 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr1:59271600-59277200 Weak transcription Gastric stomach
19 chr1:59272200-59277200 Weak transcription Stomach Mucosa stomach
20 chr1:59272600-59279200 Weak transcription Duodenum Mucosa Duodenum
21 chr1:59273200-59278200 Weak transcription Primary T cells from cord blood blood
22 chr1:59273200-59278200 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr1:59273200-59278200 Weak transcription Spleen Spleen
24 chr1:59273800-59279600 Enhancers HepG2 liver
25 chr1:59274000-59275600 Enhancers Lung lung
26 chr1:59274200-59276600 Weak transcription Aorta Aorta
27 chr1:59274200-59278400 Weak transcription GM12878-XiMat blood
28 chr1:59274600-59275600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr1:59274600-59276000 Enhancers Muscle Satellite Cultured Cells --
30 chr1:59274600-59276000 Enhancers Fetal Intestine Large intestine
31 chr1:59274600-59276200 Enhancers Placenta Amnion Placenta Amnion
32 chr1:59274600-59276400 Enhancers Placenta Placenta
33 chr1:59274600-59279800 Enhancers HMEC breast
34 chr1:59274600-59280200 Enhancers NHEK skin
35 chr1:59274600-59281400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr1:59274800-59275600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr1:59274800-59275800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr1:59274800-59275800 Enhancers Primary hematopoietic stem cells short term culture blood
39 chr1:59274800-59276000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr1:59274800-59276000 Enhancers Primary B cells from cord blood blood
41 chr1:59274800-59278400 Enhancers Breast Myoepithelial Primary Cells Breast
42 chr1:59274800-59280000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr1:59274800-59280000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr1:59275000-59275600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr1:59275000-59275600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
46 chr1:59275000-59275600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr1:59275000-59275600 Enhancers Fetal Adrenal Gland Adrenal Gland
48 chr1:59275000-59275600 Enhancers Fetal Intestine Small intestine
49 chr1:59275000-59275600 Enhancers Ovary ovary
50 chr1:59275000-59275600 Enhancers Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015