The 2.0 version of rSNPBase

Variant report

Variant rs17118526
Chromosome Location chr1:59480271-59480272
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:82 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:59466000-59480800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr1:59471400-59481200 Weak transcription Esophagus oesophagus
3 chr1:59473400-59485400 Weak transcription Small Intestine intestine
4 chr1:59473800-59485200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
5 chr1:59478200-59480400 Flanking Active TSS GM12878-XiMat blood
6 chr1:59478200-59480600 Enhancers HUES64 Cell Line embryonic stem cell
7 chr1:59478200-59481000 Enhancers iPS-15b Cell Line embryonic stem cell
8 chr1:59478200-59481200 Enhancers Primary B cells from cord blood blood
9 chr1:59478400-59480400 Enhancers H1 Cell Line embryonic stem cell
10 chr1:59478400-59480800 Enhancers Fetal Intestine Small intestine
11 chr1:59478400-59483600 Enhancers Placenta Amnion Placenta Amnion
12 chr1:59478600-59483800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr1:59478800-59481400 Enhancers Stomach Mucosa stomach
14 chr1:59478800-59483200 Enhancers NH-A brain
15 chr1:59478800-59483400 Enhancers HMEC breast
16 chr1:59478800-59483600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr1:59478800-59483800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr1:59478800-59483800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
19 chr1:59479000-59482400 Enhancers Breast Myoepithelial Primary Cells Breast
20 chr1:59479200-59480400 Enhancers H9 Cell Line embryonic stem cell
21 chr1:59479400-59480800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr1:59479400-59480800 Weak transcription Pancreas Pancrea
23 chr1:59479400-59481000 Enhancers Rectal Mucosa Donor 31 rectum
24 chr1:59479400-59481200 Enhancers Spleen Spleen
25 chr1:59479400-59481400 Weak transcription Left Ventricle heart
26 chr1:59479400-59481400 Weak transcription A549 lung
27 chr1:59479400-59481600 Weak transcription Psoas Muscle Psoas
28 chr1:59479400-59482000 Enhancers Colon Smooth Muscle Colon
29 chr1:59479400-59483000 Enhancers Primary B cells from peripheral blood blood
30 chr1:59479400-59483200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
31 chr1:59479400-59483400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
32 chr1:59479400-59484000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr1:59479600-59480400 Enhancers Rectal Smooth Muscle rectum
34 chr1:59479600-59480600 Enhancers Fetal Lung lung
35 chr1:59479600-59480600 Weak transcription Fetal Muscle Trunk muscle
36 chr1:59479600-59480600 Weak transcription Fetal Thymus thymus
37 chr1:59479600-59481000 Enhancers Duodenum Mucosa Duodenum
38 chr1:59479600-59481200 Weak transcription Hela-S3 cervix
39 chr1:59479600-59482000 Enhancers iPS-18 Cell Line embryonic stem cell
40 chr1:59479600-59482000 Enhancers Adipose Nuclei Adipose
41 chr1:59479600-59482400 Enhancers Skeletal Muscle Male skeletal muscle
42 chr1:59479600-59483000 Weak transcription Primary monocytes fromperipheralblood blood
43 chr1:59479600-59483400 Enhancers HSMM muscle
44 chr1:59479600-59483600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
45 chr1:59479600-59484200 Weak transcription Right Atrium heart
46 chr1:59479600-59484600 Weak transcription K562 blood
47 chr1:59479600-59485200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr1:59479600-59486600 Enhancers Fetal Muscle Leg muscle
49 chr1:59479800-59480400 Enhancers Fetal Kidney kidney
50 chr1:59479800-59480400 Enhancers Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015