Variant report

Variant	rs7527545
Chromosome Location	chr1:59587726-59587727
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17118526	1.00[AMR][1000 genomes]
rs57129742	1.00[AMR][1000 genomes]
rs59100869	1.00[AMR][1000 genomes]
rs59165416	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829970	chr1:59547102-59711161	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59583000-59588200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:59583200-59588000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:59583200-59588200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:59583200-59588200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:59583200-59588200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:59583200-59588200	Weak transcription	HMEC	breast
7	chr1:59583200-59588400	Weak transcription	NH-A	brain
8	chr1:59583200-59588800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:59583200-59594000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:59583600-59588000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:59583600-59588000	Weak transcription	Osteobl	bone
12	chr1:59583600-59588200	Weak transcription	NHEK	skin
13	chr1:59583600-59588400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:59583600-59588800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:59586800-59587800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:59587200-59592600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:59587400-59587800	Weak transcription	Adipose Nuclei	Adipose
18	chr1:59587600-59595800	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links