Variant report

Variant	rs17119591
Chromosome Location	chr2:97435557-97435558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:97434784..97436849-chr2:97438455..97440703,2	MCF-7	breast:
2	chr2:97419258..97420904-chr2:97432696..97435647,2	MCF-7	breast:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs11889085	0.93[ASN][1000 genomes]
rs12172	0.81[ASN][1000 genomes]
rs1320146	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs13419073	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs17119562	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17119564	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17119598	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2139406	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2276654	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2280356	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2314399	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2872633	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3731940	1.00[CEU][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs3731941	1.00[CHB][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs56797569	0.98[ASN][1000 genomes]
rs56913233	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57582887	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58147284	0.81[ASN][1000 genomes]
rs59073958	0.92[EUR][1000 genomes]
rs59648446	0.88[EUR][1000 genomes]
rs61742095	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61750875	0.90[EUR][1000 genomes]
rs62152765	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs62152766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62152767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62152768	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs62152770	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs62152771	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62152772	0.93[ASN][1000 genomes]
rs62152773	0.93[ASN][1000 genomes]
rs62152774	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62152775	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62152777	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62152780	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62152783	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62152784	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62152785	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62152786	0.86[ASN][1000 genomes]
rs62152787	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62152790	0.81[ASN][1000 genomes]
rs62152793	0.81[ASN][1000 genomes]
rs62152794	0.81[ASN][1000 genomes]
rs62152834	0.81[ASN][1000 genomes]
rs62156206	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs62156207	0.96[EUR][1000 genomes]
rs62156208	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62156209	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62156210	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62156211	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62156212	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62156213	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62156216	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62156219	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62156220	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62156221	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62156222	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62156223	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62156225	0.98[ASN][1000 genomes]
rs62156226	0.98[ASN][1000 genomes]
rs62156227	0.98[ASN][1000 genomes]
rs62156228	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62156229	0.83[ASN][1000 genomes]
rs62156230	0.98[ASN][1000 genomes]
rs62156231	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs62156232	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62156233	0.98[ASN][1000 genomes]
rs62156234	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6576981	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6576986	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs6576987	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs6751132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6753987	1.00[CHB][hapmap]
rs6756482	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs6758151	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72809850	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72811623	0.81[ASN][1000 genomes]
rs7568206	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7580942	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs878064	0.95[ASN][1000 genomes]
rs9948	1.00[CHB][hapmap]
rs9973492	1.00[CHB][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933671	chr2:96739308-97652262	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv1000780	chr2:96740430-97671395	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv535826	chr2:96740430-97671395	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv874677	chr2:96756547-97717345	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
5	nsv1001204	chr2:96766559-97728507	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
6	nsv535827	chr2:96766559-97728507	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
7	esv3460902	chr2:97138421-97459342	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	esv3460903	chr2:97138421-97459342	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
9	nsv874680	chr2:97309574-97678319	Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
10	nsv834307	chr2:97321447-97479266	Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
11	nsv526313	chr2:97333492-97660619	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
12	nsv874681	chr2:97410949-97577343	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
13	nsv874682	chr2:97423626-97567389	Transcr. at gene 5' and 3' Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:97430200-97436200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr2:97430200-97439800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr2:97430200-97440800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr2:97430200-97442400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:97430200-97462800	Weak transcription	Aorta	Aorta
6	chr2:97430400-97435600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:97430400-97435600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:97430400-97436000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr2:97430400-97437800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr2:97430400-97440800	Weak transcription	A549	lung
11	chr2:97430400-97441000	Weak transcription	NHLF	lung
12	chr2:97430400-97442400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:97430400-97452200	Weak transcription	Ovary	ovary
14	chr2:97430600-97435600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr2:97430600-97435600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr2:97430600-97436000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr2:97430600-97437800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr2:97430600-97437800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:97430600-97438000	Enhancers	Fetal Intestine Large	intestine
20	chr2:97430600-97438600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr2:97430600-97438600	Enhancers	Stomach Mucosa	stomach
22	chr2:97430600-97438800	Weak transcription	Fetal Thymus	thymus
23	chr2:97430800-97435800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:97430800-97438600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr2:97430800-97439600	Genic enhancers	Fetal Intestine Small	intestine
26	chr2:97431200-97438000	Weak transcription	Fetal Lung	lung
27	chr2:97431400-97435600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr2:97431400-97438400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr2:97431400-97439600	Weak transcription	Thymus	Thymus
30	chr2:97431400-97451400	Weak transcription	Hela-S3	cervix
31	chr2:97431600-97438000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr2:97432200-97438200	Strong transcription	Primary T cells from cord blood	blood
33	chr2:97432400-97438200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr2:97432600-97436200	Enhancers	Pancreas	Pancrea
35	chr2:97432600-97436800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr2:97432600-97437600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr2:97432800-97438600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr2:97433000-97437800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr2:97433000-97439800	Weak transcription	K562	blood
40	chr2:97433000-97466800	Weak transcription	Fetal Brain Male	brain
41	chr2:97433200-97436000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr2:97433200-97436200	Enhancers	Colonic Mucosa	Colon
43	chr2:97433200-97437600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr2:97433200-97439800	Weak transcription	Brain Germinal Matrix	brain
45	chr2:97433400-97437800	Weak transcription	Dnd41	blood
46	chr2:97433400-97438000	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr2:97433400-97438600	Weak transcription	Primary hematopoietic stem cells	blood
48	chr2:97434000-97436200	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr2:97434000-97437000	Enhancers	Fetal Muscle Trunk	muscle
50	chr2:97434000-97438200	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links