Variant report

Variant	rs62152777
Chromosome Location	chr2:97452100-97452101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:97426686..97428593-chr2:97451659..97454147,2	MCF-7	breast:
2	chr2:97439092..97441796-chr2:97451339..97454243,2	K562	blood:

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10203346	0.85[ASN][1000 genomes]
rs10439526	0.83[ASN][1000 genomes]
rs11889085	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12172	0.88[ASN][1000 genomes]
rs1320146	0.88[ASN][1000 genomes]
rs13419073	0.88[ASN][1000 genomes]
rs17119562	0.86[ASN][1000 genomes]
rs17119564	0.90[ASN][1000 genomes]
rs17119591	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17119598	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2276654	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2314399	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3731941	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56797569	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56913233	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57582887	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs58147284	0.88[ASN][1000 genomes]
rs59244622	0.83[ASN][1000 genomes]
rs62152765	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62152766	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62152767	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62152768	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62152770	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62152771	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62152772	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62152773	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62152774	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62152775	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62152780	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62152783	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62152784	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62152785	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62152786	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62152787	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62152788	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62152790	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62152793	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62152794	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62152834	0.88[ASN][1000 genomes]
rs62152860	0.85[ASN][1000 genomes]
rs62156208	0.90[ASN][1000 genomes]
rs62156209	0.90[ASN][1000 genomes]
rs62156210	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62156211	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62156212	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62156213	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62156216	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62156219	0.90[ASN][1000 genomes]
rs62156220	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62156221	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62156222	0.90[ASN][1000 genomes]
rs62156223	0.90[ASN][1000 genomes]
rs62156225	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62156226	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62156227	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62156228	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs62156229	0.88[EUR][1000 genomes]
rs62156230	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62156231	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62156232	0.90[ASN][1000 genomes]
rs62156233	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62156234	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6576981	0.90[ASN][1000 genomes]
rs6576986	0.88[ASN][1000 genomes]
rs6576987	0.88[ASN][1000 genomes]
rs6751132	0.90[ASN][1000 genomes]
rs6756482	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6758151	0.88[ASN][1000 genomes]
rs72809850	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72811623	0.88[ASN][1000 genomes]
rs7568206	0.90[ASN][1000 genomes]
rs7580942	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs878064	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9973492	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933671	chr2:96739308-97652262	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv1000780	chr2:96740430-97671395	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv535826	chr2:96740430-97671395	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv874677	chr2:96756547-97717345	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
5	nsv1001204	chr2:96766559-97728507	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
6	nsv535827	chr2:96766559-97728507	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
7	esv3460902	chr2:97138421-97459342	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	esv3460903	chr2:97138421-97459342	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
9	nsv874680	chr2:97309574-97678319	Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
10	nsv834307	chr2:97321447-97479266	Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
11	nsv526313	chr2:97333492-97660619	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
12	nsv874681	chr2:97410949-97577343	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
13	nsv874682	chr2:97423626-97567389	Transcr. at gene 5' and 3' Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:97430200-97462800	Weak transcription	Aorta	Aorta
2	chr2:97430400-97452200	Weak transcription	Ovary	ovary
3	chr2:97433000-97466800	Weak transcription	Fetal Brain Male	brain
4	chr2:97436200-97452600	Weak transcription	Colon Smooth Muscle	Colon
5	chr2:97436400-97454000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr2:97436600-97452400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr2:97436600-97452600	Weak transcription	HepG2	liver
8	chr2:97438200-97452200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr2:97440000-97452200	Weak transcription	Left Ventricle	heart
10	chr2:97440000-97454000	Weak transcription	Brain Angular Gyrus	brain
11	chr2:97440000-97454000	Weak transcription	Pancreas	Pancrea
12	chr2:97440000-97454200	Weak transcription	Fetal Stomach	stomach
13	chr2:97440000-97459600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr2:97440000-97480800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr2:97440200-97453400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr2:97440200-97453800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr2:97440400-97454000	Weak transcription	Gastric	stomach
18	chr2:97440400-97462600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr2:97440400-97462800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr2:97440400-97462800	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr2:97440400-97462800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr2:97440600-97452600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr2:97441000-97463400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr2:97442600-97462800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr2:97442800-97454000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr2:97442800-97462600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr2:97442800-97462600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr2:97442800-97466600	Weak transcription	Primary B cells from cord blood	blood
29	chr2:97445800-97454200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr2:97446200-97452800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr2:97447400-97452400	Weak transcription	Fetal Intestine Small	intestine
32	chr2:97447600-97452400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr2:97447600-97454000	Weak transcription	Psoas Muscle	Psoas
34	chr2:97449200-97452400	Weak transcription	Esophagus	oesophagus
35	chr2:97449200-97453400	Weak transcription	Fetal Muscle Leg	muscle
36	chr2:97449200-97453600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr2:97449200-97453600	Weak transcription	Lung	lung
38	chr2:97449200-97454000	Weak transcription	Adipose Nuclei	Adipose
39	chr2:97449400-97464800	Weak transcription	GM12878-XiMat	blood
40	chr2:97449600-97462600	Weak transcription	Primary T cells from cord blood	blood
41	chr2:97450000-97454000	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr2:97450200-97455400	Enhancers	Stomach Mucosa	stomach
43	chr2:97450400-97452400	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr2:97450600-97454400	Weak transcription	Right Ventricle	heart
45	chr2:97450600-97462800	Weak transcription	Spleen	Spleen
46	chr2:97451400-97453400	Weak transcription	Colonic Mucosa	Colon
47	chr2:97451400-97454000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr2:97451600-97452800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr2:97451800-97452400	Weak transcription	Small Intestine	intestine
50	chr2:97451800-97453000	Enhancers	Placenta Amnion	Placenta Amnion

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